To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("snapCGH")

In most cases, you don't need to download the package archive at all.

snapCGH

Segmentation, normalisation and processing of aCGH data.

Bioconductor version: Release (2.14)

Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.

Author: Mike L. Smith, John C. Marioni, Steven McKinney, Thomas Hardcastle, Natalie P. Thorne

Maintainer: John Marioni <marioni at uchicago.edu>

Citation (from within R, enter citation("snapCGH")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("snapCGH")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("snapCGH")

 

PDF R Script Segmentation Overview
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, Preprocessing, Software, TwoChannel
Version 1.34.0
In Bioconductor since BioC 1.8 (R-2.3)
License GPL
Depends limma, DNAcopy, methods
Imports aCGH, cluster, DNAcopy, GLAD, graphics, grDevices, limma, methods, stats, tilingArray, utils
Suggests
System Requirements
URL
Depends On Me
Imports Me ADaCGH2
Suggests Me beadarraySNP

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source snapCGH_1.34.0.tar.gz
Windows Binary snapCGH_1.34.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) snapCGH_1.34.0.tgz
Mac OS X 10.9 (Mavericks) snapCGH_1.34.0.tgz
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