spliceSites

Manages align gap positions from RNA-seq data

Bioconductor version: Release (2.14)

Align gap positions from RNA-seq data

Author: Wolfgang Kaisers

Maintainer: Wolfgang Kaisers <kaisers at med.uni-duesseldorf.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("spliceSites")

To cite this package in a publication, start R and enter:

    citation("spliceSites")

Documentation

PDF R Script RNA-seq
PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, Proteomics, RNASeq, Software
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-2
Depends methods, rbamtools, refGenome (>= 1.1.2), doBy, Biobase, Biostrings(>= 2.28.0), seqLogo
Imports BiocGenerics
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source spliceSites_1.2.0.tar.gz
Windows Binary spliceSites_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) spliceSites_1.2.0.tgz
Mac OS X 10.9 (Mavericks)
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