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source("http://bioconductor.org/biocLite.R")
biocLite("spotSegmentation")

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spotSegmentation

 

Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots

Bioconductor version: Release (3.1)

Spot segmentation via model-based clustering and gridding for blocks within microarray slides, as described in Li et al, Robust Model-Based Segmentation of Microarray Images, Technical Report no. 473, Department of Statistics, University of Washington.

Author: Qunhua Li, Chris Fraley, Adrian Raftery Department of Statistics, University of Washington

Maintainer: Chris Fraley <fraley at stat.washington.edu>

Citation (from within R, enter citation("spotSegmentation")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("spotSegmentation")

Documentation

PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.42.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 10 years)
License GPL (>= 2)
Depends R (>= 2.10), mclust
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.stat.washington.edu/fraley
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source spotSegmentation_1.42.0.tar.gz
Windows Binary spotSegmentation_1.42.0.zip
Mac OS X 10.6 (Snow Leopard) spotSegmentation_1.42.0.tgz
Mac OS X 10.9 (Mavericks) spotSegmentation_1.42.0.tgz
Subversion source (username/password: readonly)
GitHub source https://github.com/Bioconductor-mirror/spotSegmentation/tree/release-3.1
Package Short Url http://bioconductor.org/packages/spotSegmentation/
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