tRNAscanImport

DOI: 10.18129/B9.bioc.tRNAscanImport    

Imports a tRNAscan-SE result file as GRanges object

Bioconductor version: Release (3.7)

The package imports the result of tRNAscan-SE as a GRanges object.

Author: Felix GM Ernst [aut, cre]

Maintainer: Felix GM Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("tRNAscanImport")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("tRNAscanImport")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNAscanImport")

 

HTML R Script tRNAscanImport
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataImport, Preprocessing, Software, Visualization, WorkflowStep
Version 1.0.1
License GPL-3 + file LICENSE
Depends R (>= 3.5), GenomicRanges
Imports methods, assertive, stringr, reshape2, BiocGenerics, Biostrings, S4Vectors, GenomicRanges, GenomeInfoDb, rtracklayer
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat, graphics, ggplot2, scales
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tRNAscanImport_1.0.1.tar.gz
Windows Binary tRNAscanImport_1.0.1.zip
Mac OS X 10.11 (El Capitan) tRNAscanImport_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/tRNAscanImport
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tRNAscanImport
Package Short Url http://bioconductor.org/packages/tRNAscanImport/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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