vtpnet

variant-transcription factor-phenotype networks

Bioconductor version: Release (2.14)

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("vtpnet")

Citation (from within R, enter citation("vtpnet")):

Documentation

PDF R Script vtpnet: variant-transcription factor-network tools
PDF   Reference Manual

Details

biocViews Network, Software
Version 0.4.0
In Bioconductor since BioC 2.13 (R-3.0)
License Artistic-2.0
Depends R (>= 3.0.0), graph, GenomicRanges
Imports
Suggests MotifDb, VariantAnnotation, Rgraphviz
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source vtpnet_0.4.0.tar.gz
Windows Binary vtpnet_0.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) vtpnet_0.4.0.tgz
Mac OS X 10.9 (Mavericks) vtpnet_0.4.0.tgz
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