To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("yaqcaffy")

In most cases, you don't need to download the package archive at all.

yaqcaffy

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: Release (2.14)

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at gmail.com>

Citation (from within R, enter citation("yaqcaffy")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("yaqcaffy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yaqcaffy")

 

PDF R Script yaqcaffy: Affymetrix quality control and MAQC reproducibility
PDF   Reference Manual
Text   NEWS

Details

biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software
Version 1.24.0
In Bioconductor since BioC 2.2 (R-2.7)
License Artistic-2.0
Depends simpleaffy(>= 2.19.3), methods
Imports stats4
Suggests MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
System Requirements
URL
Depends On Me
Imports Me
Suggests Me qcmetrics

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source yaqcaffy_1.24.0.tar.gz
Windows Binary yaqcaffy_1.24.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) yaqcaffy_1.24.0.tgz
Mac OS X 10.9 (Mavericks) yaqcaffy_1.24.0.tgz
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