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yaqcaffy
Affymetrix expression data quality control and reproducibility analysis
Bioconductor version: Release (2.9)
Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.
Author: Laurent Gatto
Maintainer: Laurent Gatto
To install this package, start R and enter:
source("http:///biocLite.R")
biocLite("yaqcaffy")
To cite this package in a publication, start R and enter:
citation("yaqcaffy")
Documentation
| R Script | yaqcaffy: Affymetrix quality control and MAQC reproducibility | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Microarray, OneChannel, QualityControl, ReportWriting |
| Depends | simpleaffy, methods |
| Imports | |
| Suggests | MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk |
| System Requirements | |
| License | Artistic-2.0 |
| URL | http://sites.google.com/site/laurentgatto/r-bioconductor/yaqcaffy |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.14.0 |
| Since | Bioconductor 2.2 (R-2.7) |
Package Downloads
| Package Source | yaqcaffy_1.14.0.tar.gz |
| Windows Binary | yaqcaffy_1.14.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | yaqcaffy_1.14.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Flow Cytometry and other assays
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