Changes in version 1.18.0:
USER VISIBLE CHANGES
o Using NEWS.Rd
USER VISIBLE CHANGES
o oligoSnpSet, CopyNumberSet, and BeadStudioSet (defined in
oligoClasses) require that all assayData elements are integer
matrices. In particular, copy number should be scaled by 100 and
coerced to integers and B allele frequencies should be scaled by
1000 and coerced to integers. The function integerMatrix(x, 100)
in the oligoClasses package will coerce a matrix of doubles, 'x',
to a matrix of integers scaled by a factor of 100. The hmm methods
for these classes expect that the assay data elements are
appropriately scaled integer matrices.