To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP141.GRCh38")

In most cases, you don't need to download the package archive at all.

SNPlocs.Hsapiens.dbSNP141.GRCh38

 

   

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

SNP locations for Homo sapiens (dbSNP Build 141)

Bioconductor version: Release (3.5)

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 141. The source data files used for this package were created by NCBI on May 1st, 2014, and contain SNPs mapped to reference genome GRCh38. Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38. IMPORTANT NOTE: This package is deprecated. Please use a SNPlocs data package based on a more recent dbSNP BUILD instead (e.g. BUILD 144 or BUILD 149). You can call BSgenome::available.SNPs() from R to get the list of available SNPlocs data packages.

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP141.GRCh38")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP141.GRCh38")

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version 0.99.11
License Artistic-2.0
Depends R (>= 2.10), S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome(>= 1.33.9)
Imports methods, utils, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
LinkingTo
Suggests Biostrings, BSgenome.Hsapiens.NCBI.GRCh38(>= 1.3.19)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me GenomicFeatures, genotypeeval, XtraSNPlocs.Hsapiens.dbSNP141.GRCh38

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SNPlocs.Hsapiens.dbSNP141.GRCh38_0.99.11.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url http://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP141.GRCh38/
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