DOI: 10.18129/B9.bioc.SNPlocs.Hsapiens.dbSNP142.GRCh37    

SNP locations for Homo sapiens (dbSNP Build 142)

Bioconductor version: Release (3.6)

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 142. The source data files used for this package were created by NCBI on October 14, 2014, and contain SNPs mapped to reference genome GRCh37.p13. WARNING: Note that the GRCh37.p13 genome is a patched version of GRCh37 but the patch doesn't alter chromosomes 1-22, X, Y, MT. GRCh37 itself is the same as the hg19 genome from UCSC *except* for the mitochondrion chromosome. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg19 and they will land at the correct location but this injection will exclude chrM (i.e. nothing will be injected in that sequence).

Author: Herv\'e Pag\`es

Maintainer: Simon Coetzee <simon.coetzee at>

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biocViews AnnotationData, Genetics, Homo_sapiens
Version 0.99.5
License Artistic-2.0
Depends R (>= 2.10), IRanges, GenomeInfoDb, GenomicRanges, BSgenome(>= 1.25.6)
Imports methods, utils, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked(>= 1.3.19)
Depends On Me
Imports Me
Suggests Me motifbreakR

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