HMP16SData

DOI: 10.18129/B9.bioc.HMP16SData    

16S rRNA Sequencing Data from the Human Microbiome Project

Bioconductor version: Release (3.7)

HMP16SData is a Bioconductor ExperimentData package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1–3 and 3–5. Raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center. Processed data is provided as SummarizedExperiment class objects via ExperimentHub.

Author: Lucas Schiffer <schiffer.lucas at gmail.com>, Rimsha Azhar <rimsha_azhar at hotmail.com>, Marcel Ramos <marcel.ramos at roswellpark.org>, Ludwig Geistlinger <ludwig.geistlinger at sph.cuny.edu>, Levi Waldron <lwaldron.research at gmail.com>

Maintainer: Lucas Schiffer <schiffer.lucas at gmail.com>

Citation (from within R, enter citation("HMP16SData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HMP16SData")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HMP16SData")

 

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Details

biocViews ExperimentData, Homo_sapiens_Data, MicrobiomeData, ReproducibleResearch, SequencingData
Version 1.0.1
License Artistic-2.0
Depends R (>= 3.5.0), SummarizedExperiment
Imports AnnotationHub, assertthat, dplyr, ExperimentHub, kableExtra, knitr, magrittr, methods, readr, S4Vectors, tibble, utils
LinkingTo
Suggests Biobase, BiocCheck, BiocInstaller, BiocStyle, circlize, covr, cowplot, curatedMetagenomicData, dendextend, devtools, ggplot2, gridExtra, haven, phyloseq, rmarkdown, roxygen2, stats, testthat
SystemRequirements
Enhances
URL https://github.com/waldronlab/HMP16SData
BugReports https://github.com/waldronlab/HMP16SData/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HMP16SData_1.0.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/HMP16SData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HMP16SData
Package Short Url http://bioconductor.org/packages/HMP16SData/
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