To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RIPSeekerData")

In most cases, you don't need to download the package archive at all.

RIPSeekerData

test data for RIPSeeker

Bioconductor version: Release (2.14)

The RIP-seq data in BAM format are the test data for the package RIPSeeker. The data correspond to two RIP-seq experiments, namely PRC2 and CCNT1. Raw data from NCBI Gene Expression Omnibus under accession numbers GSE17064 for PRC2 and in-house for CCNT1.

Author: Yue Li

Maintainer: Alejandro Reyes <reyes at embl.de>

Citation (from within R, enter citation("RIPSeekerData")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RIPSeekerData")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RIPSeekerData")

 

PDF R Script RIP-seq datasets for testing RIPSeeker package
PDF   Reference Manual

Details

biocViews ExperimentData, RIPseqData
Version 1.0.0
License GPL-2
Depends RIPSeeker
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RIPSeekerData_1.0.0.tar.gz
Windows Binary RIPSeekerData_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RIPSeekerData_1.0.0.tgz
Mac OS X 10.9 (Mavericks) RIPSeekerData_1.0.0.tgz
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