Registration and Call for Abstracts Open for Bioc2024

simpIntLists

The package contains BioGRID interactions for various organisms in a simple format


Bioconductor version: Release (3.18)

The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin-Atalay

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

Citation (from within R, enter citation("simpIntLists")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("simpIntLists")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("simpIntLists")
simpIntLists PDF R Script
Reference Manual PDF

Details

biocViews Arabidopsis_thaliana_Data, ExperimentData
Version 1.38.0
License GPL (>= 2)
Depends
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me ibh
Imports Me
Suggests Me GeneNetworkBuilder
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package simpIntLists_1.38.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/simpIntLists
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/simpIntLists
Package Short Url https://bioconductor.org/packages/simpIntLists/
Package Downloads Report Download Stats