Download stats for Bioconductor software packages

The number reported next to each package name is the download score, that is, the average number of distinct IPs that "hit" the package each month for the last 12 months (not counting the current month).


1	BiocVersion (57963)	26	DESeq2 (21212)	51	HDF5Array (12420)
2	GenomeInfoDb (56036)	27	rtracklayer (21000)	52	multtest (12178)
3	BiocGenerics (54875)	28	SparseArray (20137)	53	BiocSingular (11775)
4	S4Vectors (54089)	29	ggtree (19782)	54	ScaledMatrix (11740)
5	IRanges (50252)	30	GenomicFeatures (19716)	55	ProtGenerics (11520)
6	zlibbioc (49610)	31	rhdf5 (19486)	56	AnnotationHub (10913)
7	XVector (46877)	32	treeio (19434)	57	impute (10300)
8	Biobase (46691)	33	BiocIO (18960)	58	interactiveDisplayBase (10273)
9	Biostrings (44551)	34	rhdf5filters (18754)	59	AnnotationFilter (10140)
10	DelayedArray (42706)	35	graph (18301)	60	BiocNeighbors (10085)
11	BiocParallel (41722)	36	annotate (18110)	61	Rgraphviz (9864)
12	GenomicRanges (41289)	37	clusterProfiler (17139)	62	ensembldb (9833)
13	MatrixGenerics (39135)	38	enrichplot (16953)	63	scuttle (9721)
14	SummarizedExperiment (37488)	39	DOSE (16749)	64	RBGL (9461)
15	AnnotationDbi (36423)	40	qvalue (16677)	65	VariantAnnotation (9341)
16	KEGGREST (34998)	41	GOSemSim (16394)	66	GEOquery (8968)
17	S4Arrays (34061)	42	fgsea (16241)	67	GSEABase (8515)
18	limma (31365)	43	DelayedMatrixStats (15979)	68	affy (8447)
19	BiocFileCache (25564)	44	sparseMatrixStats (15195)	69	affyio (8309)
20	biomaRt (23986)	45	beachmat (15067)	70	geneplotter (7694)
21	Rhtslib (23840)	46	SingleCellExperiment (14491)	71	ExperimentHub (7350)
22	GenomicAlignments (23522)	47	preprocessCore (14050)	72	sva (7018)
23	Rhdf5lib (22922)	48	ComplexHeatmap (13719)	73	scater (6673)
24	Rsamtools (22785)	49	BSgenome (13333)	74	BiocStyle (6289)
25	edgeR (22678)	50	genefilter (12982)	75	ShortRead (6226)

Package	Version	Installed Path
alembic	1.13.1
awswrangler	3.7.2
beautifulsoup4	4.12.2
black	23.10.0
blinker	1.7.0
boto3	1.34.15
botocore	1.34.15
cachelib	0.9.0
certifi	2023.11.17
charset-normalizer	3.3.2
click	8.1.7
coverage	7.4.0
cramjam	2.7.0
dnspython	2.4.2
email-validator	2.0.0.post2
environs	9.5.0
exceptiongroup	1.2.0
factory-boy	3.3.0
Faker	22.1.0
fastparquet	2023.10.1
flake8	6.1.0
flake8-blind-except	0.2.1
flake8-debugger	4.1.2
flake8-docstrings	1.7.0
flake8-isort	6.1.0
flask	2.3.3
Flask-Caching	2.1.0
Flask-DebugToolbar	0.13.1
Flask-Migrate	4.0.5
flask-sqlalchemy	3.1.1
Flask-Static-Digest	0.4.0
flask-wtf	1.2.1
fsspec	2023.12.2
gevent	23.9.1
greenlet	3.0.1
gunicorn	21.2.0
idna	3.6
iniconfig	2.0.0
isort	5.12.0
itsdangerous	2.1.2
Jinja2	3.1.2
jmespath	1.0.1
Mako	1.3.0
MarkupSafe	2.1.3
marshmallow	3.20.2
mccabe	0.7.0
mypy-extensions	1.0.0
numpy	1.26.3
packaging	23.2
pandas	2.1.4
pathspec	0.12.1
pep8-naming	0.13.3
pip	22.0.2
platformdirs	4.1.0
playwright	1.40.0
pluggy	1.3.0
psycopg2-binary	2.9.9
pyarrow	15.0.2
pycodestyle	2.11.1
pydocstyle	6.3.0
pyee	11.0.1
pyflakes	3.1.0
pytest	7.4.2
pytest-base-url	2.0.0
pytest-cov	4.1.0
pytest-playwright	0.4.3
python-dateutil	2.8.2
python-dotenv	1.0.0
python-slugify	8.0.1
pytz	2023.3.post1
requests	2.31.0
s3transfer	0.10.0
setuptools	59.6.0
six	1.16.0
snowballstemmer	2.2.0
soupsieve	2.5
SQLAlchemy	2.0.22
supervisor	4.2.5
text-unidecode	1.3
tomli	2.0.1
typing-extensions	4.9.0
tzdata	2023.4
urllib3	2.0.7
waitress	2.1.2
WebOb	1.8.7
webstats-web	0.1.1
WebTest	3.0.0
werkzeug	2.3.7
wheel	0.37.1
wtforms	3.1.0
zope.event	5.0
zope.interface	6.1

Resource	Value
User CPU time	27.343 msec
System CPU time	0.000 msec
Total CPU time	27.343 msec
Elapsed time	176.366 msec
Context switches	13 voluntary, 0 involuntary

Key	Value
HTTP_CONNECTION	Keep-Alive
HTTP_HOST	master.bioconductor.org
HTTP_USER_AGENT	Amazon CloudFront
QUERY_STRING
REMOTE_ADDR	172.30.2.48
REQUEST_METHOD	GET
SCRIPT_NAME
SERVER_NAME	0.0.0.0
SERVER_PORT	8000
SERVER_PROTOCOL	HTTP/1.1
SERVER_SOFTWARE	gunicorn/21.2.0

Key	Value
APPLICATION_ROOT	`'/'`
AWS_PARAMETER_PATH	`None`
CACHE_TYPE	`'SimpleCache'`
DEBUG	`True`
DEBUG_TB_ENABLED	`True`
DEBUG_TB_HOSTS	`()`
DEBUG_TB_INTERCEPT_REDIRECTS	`False`
DEBUG_TB_PANELS	('flask_debugtoolbar.panels.versions.VersionDebugPanel', 'flask_debugtoolbar.panels.timer.TimerDebugPanel', 'flask_debugtoolbar.panels.headers.HeaderDebugPanel', 'flask_debugtoolbar.panels.request_vars.RequestVarsDebugPanel', 'flask_debugtoolbar.panels.config_vars.ConfigVarsDebugPanel', 'flask_debugtoolbar.panels.template.TemplateDebugPanel', 'flask_debugtoolbar.panels.sqlalchemy.SQLAlchemyDebugPanel', 'flask_debugtoolbar.panels.logger.LoggingPanel', 'flask_debugtoolbar.panels.route_list.RouteListDebugPanel', 'flask_debugtoolbar.panels.profiler.ProfilerDebugPanel', 'flask_debugtoolbar.panels.g.GDebugPanel')
ENV	`'development'`
EXPLAIN_TEMPLATE_LOADING	`False`
FLASK_STATIC_DIGEST_BLACKLIST_FILTER	`[]`
FLASK_STATIC_DIGEST_COMPRESSION	`['gzip']`
FLASK_STATIC_DIGEST_HOST_URL	`None`
MAX_CONTENT_LENGTH	`None`
MAX_COOKIE_SIZE	`4093`
PERMANENT_SESSION_LIFETIME	`datetime.timedelta(days=31)`
PREFERRED_URL_SCHEME	`'http'`
PROPAGATE_EXCEPTIONS	`None`
SECRET_KEY	`'1849cb85026145adc5164b9568d6afbde65351264f87c25aebdadc576ae662f5'`
SEND_FILE_MAX_AGE_DEFAULT	`604800`
SERVER_NAME	`None`
SESSION_COOKIE_DOMAIN	`None`
SESSION_COOKIE_HTTPONLY	`True`
SESSION_COOKIE_NAME	`'session'`
SESSION_COOKIE_PATH	`None`
SESSION_COOKIE_SAMESITE	`None`
SESSION_COOKIE_SECURE	`False`
SESSION_REFRESH_EACH_REQUEST	`True`
SQLALCHEMY_BINDS	`{}`
SQLALCHEMY_DATABASE_URI	`'postgresql://postgres:NUhuT2Kt0oHGKDmdbt2I@bioc-webstats-prod2-cluster.cluster-c3dvjslgzl5u.us-east-1.rds.amazonaws.com:5432/webstats'`
SQLALCHEMY_ECHO	`False`
SQLALCHEMY_ENGINE_OPTIONS	`{}`
SQLALCHEMY_RECORD_QUERIES	`False`
SQLALCHEMY_TRACK_MODIFICATIONS	`False`
TEMPLATES_AUTO_RELOAD	`None`
TESTING	`False`
TRAP_BAD_REQUEST_ERRORS	`None`
TRAP_HTTP_EXCEPTIONS	`False`
URI_PATH_PREFIX	`'/packages/stats'`
USE_X_SENDFILE	`False`
WTF_CSRF_CHECK_DEFAULT	`True`
WTF_CSRF_ENABLED	`True`
WTF_CSRF_FIELD_NAME	`'csrf_token'`
WTF_CSRF_HEADERS	`['X-CSRFToken', 'X-CSRF-Token']`
WTF_CSRF_METHODS	`{'PUT', 'PATCH', 'POST', 'DELETE'}`
WTF_CSRF_SSL_STRICT	`True`
WTF_CSRF_TIME_LIMIT	`3600`

URL route	Endpoint name	HTTP methods	Is alias	Redirect to
/	spash.home	GET, HEAD, OPTIONS	False	None
/packages/stats/	stats.show_package_summary	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>.html	stats.show_package_summary	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/	stats.show_package_details	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package>	stats.show_package_details	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package>/	stats.show_package_details	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package>/index.html	stats.show_package_details	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package>_<year>_stats.tab	stats.show_package_stats	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package>_pkg_scores.tab	stats.show_package_scores	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package>_stats.tab	stats.show_package_stats	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package_path>/<package>_<year>_stats.tab	stats.show_package_stats	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/<package_path>/<package>_stats.tab	stats.show_package_stats	GET, HEAD, OPTIONS	False	None
/packages/stats/<category>/index.html	stats.show_package_details	GET, HEAD, OPTIONS	False	None
/packages/stats/bioc/bioc_packages.txt	stats.show_packages	GET, HEAD, OPTIONS	False	None
/packages/stats/index.html	stats.show_package_summary	GET, HEAD, OPTIONS	False	None
/packages/stats/static/<path:filename>	stats.static_files	GET, HEAD, OPTIONS	False	None
/static/<path:filename>	static	GET, HEAD, OPTIONS	False	None

Variable	Value
category	<PackageType.BIOC: 'bioc'>
category_links	[['data-annotation.html', 'annotation'], ['data-experiment.html', 'experiment'], ['workflows.html', 'workflow']]
category_name	'software'
category_url_stem	'bioc'
csrf_token	<function generate_csrf at 0x7e8765fac160>
g	<flask.g of 'bioc_webstats'>
generated_date	datetime.date(2024, 5, 5)
request	<Request 'http://master.bioconductor.org/packages/stats/' [GET]>
scores	defaultdict(<class 'list'>, {'A': [('a4', 83, 956), ('a4Base', 136, 627), ('a4Classif', 112, 746), ('a4Core', 159, 559), ('a4Preproc', 176, 515), ('a4Reporting', 114, 736), ('ABAEnrichment', 11, 2455), ('ABarray', 70, 1105), ('abseqR', 53, 1600), ('ABSSeq', 113, 744), ('acde', 62, 1254), ('ACE', 89, 910), ('aCGH', 210, 464), ('ACME', 82, 969), ('ADaCGH2', 72, 1082), ('ADAM', 111, 754), ('ADAMgui', 90, 900), ('adaptest', 4, 2602), ('adductomicsR', 55, 1502), ('ADImpute', 69, 1127), ('adSplit', 66, 1171), ('adverSCarial', 24, 2262), ('AffiXcan', 56, 1465), ('affxparser', 1608, 157), ('affy', 8447, 68), ('affycomp', 93, 886), ('AffyCompatible', 24, 2249), ('affyContam', 96, 868), ('affycoretools', 394, 335), ('AffyExpress', 13, 2406), ('affyILM', 64, 1204), ('affyio', 8309, 69), ('affylmGUI', 80, 987), ('affyPara', 16, 2336), ('affypdnn', 13, 2397), ('affyPLM', 1252, 176), ('affyQCReport', 18, 2305), ('AffyRNADegradation', 58, 1377), ('AffyTiling', 7, 2531), ('AGDEX', 67, 1155), ('aggregateBioVar', 64, 1207), ('Agi4x44PreProcess', 4, 2623), ('agilp', 89, 912), ('AgiMicroRna', 134, 633), ('AHMassBank', 47, 1881), ('AIMS', 430, 316), ('airpart', 53, 1590), ('alabaster', 42, 2041), ('alabaster.base', 287, 387), ('alabaster.bumpy', 79, 1000), ('alabaster.files', 27, 2232), ('alabaster.mae', 88, 919), ('alabaster.matrix', 247, 423), ('alabaster.ranges', 231, 440), ('alabaster.sce', 127, 664), ('alabaster.schemas', 276, 398), ('alabaster.se', 237, 436), ('alabaster.spatial', 79, 996), ('alabaster.string', 95, 873), ('alabaster.vcf', 81, 978), ('ALDEx2', 1172, 190), ('alevinQC', 79, 1008), ('AllelicImbalance', 101, 833), ('AlphaBeta', 52, 1645), ('AlphaMissenseR', 4, 2614), ('alpine', 50, 1737), ('ALPS', 4, 2611), ('AlpsNMR', 60, 1328), ('alsace', 15, 2345), ('altcdfenvs', 111, 754), ('AMARETTO', 119, 706), ('AMOUNTAIN', 89, 911), ('amplican', 76, 1040), ('ampliQueso', 11, 2461), ('AnalysisPageServer', 7, 2537), ('anamiR', 8, 2524), ('Anaquin', 58, 1381), ('ANCOMBC', 1203, 185), ('AneuFinder', 87, 926), ('ANF', 47, 1867), ('animalcules', 110, 759), ('annaffy', 271, 403), ('AnnBuilder', 1, 2726), ('annmap', 113, 740), ('annotate', 18110, 36), ('AnnotationDbi', 36423, 15), ('AnnotationFilter', 10140, 59), ('AnnotationForge', 2518, 128), ('AnnotationFuncs', 17, 2321), ('AnnotationHub', 10913, 56), ('AnnotationHubData', 371, 345), ('annotationTools', 126, 668), ('annotatr', 467, 303), ('anota', 83, 964), ('anota2seq', 74, 1066), ('antiProfiles', 59, 1357), ('AnVIL', 603, 263), ('AnVILBilling', 47, 1872), ('AnVILPublish', 48, 1805), ('AnVILWorkflow', 37, 2155), ('APAlyzer', 66, 1164), ('apComplex', 62, 1260), ('apeglm', 3387, 104), ('APL', 113, 740), ('applera', 1, 2752), ('appreci8R', 98, 852), ('aroma.light', 1962, 139), ('ArrayExpress', 422, 320), ('ArrayExpressHTS', 16, 2333), ('arrayMagic', 2, 2697), ('arrayMvout', 57, 1445), ('arrayQCplot', 1, 2745), ('arrayQuality', 95, 874), ('arrayQualityMetrics', 509, 286), ('ArrayTools', 16, 2325), ('ArrayTV', 14, 2375), ('ARRmNormalization', 54, 1553), ('artMS', 75, 1062), ('ASAFE', 46, 1892), ('ASEB', 54, 1541), ('ASGSCA', 55, 1521), ('ASICS', 78, 1013), ('asmn', 3, 2649), ('ASpediaFI', 7, 2532), ('ASpli', 102, 816), ('AssessORF', 51, 1661), ('ASSET', 103, 805), ('ASSIGN', 104, 801), ('ASURAT', 59, 1337), ('ATACCoGAPS', 45, 1964), ('ATACseqQC', 343, 357), ('ATACseqTFEA', 58, 1367), ('atena', 111, 756), ('AtlasRDF', 7, 2528), ('atSNP', 66, 1172), ('attract', 69, 1115), ('AUCell', 2132, 135), ('autonomics', 52, 1655), ('Autotuner', 5, 2584), ('AWFisher', 54, 1535), ('awst', 53, 1605)], 'B': [('BaalChIP', 62, 1265), ('BAC', 17, 2318), ('bacon', 101, 832), ('BADER', 65, 1189), ('BadRegionFinder', 54, 1558), ('BAGS', 56, 1473), ('ballgown', 648, 250), ('bambu', 272, 401), ('bamsignals', 1127, 199), ('BANDITS', 110, 768), ('bandle', 55, 1489), ('Banksy', 5, 2580), ('banocc', 66, 1179), ('barcodetrackR', 50, 1744), ('basecallQC', 65, 1189), ('BaseSpaceR', 60, 1300), ('Basic4Cseq', 61, 1298), ('BASiCS', 164, 547), ('BASiCStan', 51, 1658), ('BasicSTARRseq', 58, 1405), ('basilisk', 4703, 87), ('basilisk.utils', 4288, 92), ('batchelor', 3794, 98), ('BatchQC', 103, 810), ('BayesKnockdown', 49, 1758), ('BayesPeak', 15, 2341), ('BayesSpace', 220, 453), ('bayNorm', 78, 1021), ('baySeq', 405, 328), ('BBCAnalyzer', 55, 1518), ('BCRANK', 66, 1159), ('bcSeq', 54, 1527), ('BDMMAcorrect', 36, 2167), ('beachmat', 15067, 45), ('beachmat.hdf5', 38, 2149), ('beadarray', 714, 240), ('beadarraySNP', 57, 1422), ('BeadDataPackR', 674, 247), ('BeadExplorer', 1, 2730), ('BEARscc', 50, 1726), ('BEAT', 57, 1410), ('BEclear', 65, 1196), ('beer', 56, 1469), ('benchdamic', 79, 1007), ('BERT', 4, 2618), ('betaHMM', 3, 2639), ('betr', 9, 2502), ('bettr', 1, 2706), ('BG2', 39, 2120), ('bgafun', 12, 2443), ('BgeeCall', 50, 1716), ('BgeeDB', 123, 687), ('BGmix', 28, 2227), ('bgx', 61, 1282), ('BHC', 86, 937), ('BicARE', 134, 634), ('BiFET', 53, 1577), ('BiGGR', 65, 1187), ('bigmelon', 58, 1381), ('bigmemoryExtras', 14, 2371), ('bigPint', 42, 2055), ('bim', 1, 2751), ('BindingSiteFinder', 57, 1412), ('bioassayR', 71, 1096), ('Biobase', 46691, 8), ('biobroom', 180, 507), ('biobtreeR', 48, 1836), ('bioCancer', 73, 1074), ('BioCartaImage', 21, 2282), ('BiocBaseUtils', 5146, 83), ('BiocBook', 26, 2240), ('BiocCaseStudies', 14, 2364), ('BiocCheck', 1609, 156), ('biocDatasets', 1, 2734), ('BiocDockerManager', 24, 2250), ('BiocFHIR', 43, 2017), ('BiocFileCache', 25564, 19), ('BiocGenerics', 54875, 3), ('biocGraph', 162, 550), ('BiocHail', 35, 2172), ('BiocHubsShiny', 77, 1031), ('BiocInstaller', 504, 287), ('BiocIO', 18960, 33), ('BiocNeighbors', 10085, 60), ('BiocOncoTK', 73, 1071), ('BioCor', 82, 970), ('BiocParallel', 41722, 11), ('BiocPkgTools', 160, 557), ('biocroxytest', 2, 2675), ('BiocSet', 247, 424), ('BiocSingular', 11775, 53), ('BiocSklearn', 69, 1121), ('BiocStyle', 6289, 74), ('biocthis', 212, 462), ('BiocVersion', 57963, 1), ('biocViews', 4227, 93), ('BiocWorkflowTools', 179, 509), ('biodb', 192, 489), ('biodbChebi', 80, 990), ('biodbExpasy', 44, 2000), ('biodbHmdb', 55, 1506), ('biodbKegg', 63, 1232), ('biodbLipidmaps', 44, 2004), ('biodbMirbase', 37, 2158), ('biodbNcbi', 46, 1899), ('biodbNci', 41, 2090), ('biodbUniprot', 47, 1860), ('bioDist', 255, 415), ('biomaRt', 23986, 20), ('BioMedR', 2, 2656), ('biomformat', 5374, 79), ('BioMM', 29, 2224), ('BioMVCClass', 56, 1474), ('biomvRCNS', 50, 1722), ('BioNAR', 57, 1435), ('BioNERO', 246, 428), ('BioNet', 275, 400), ('BioNetStat', 75, 1050), ('BioQC', 113, 739), ('BioSeqClass', 15, 2347), ('biosigner', 82, 972), ('Biostrings', 44551, 9), ('biosvd', 12, 2438), ('BioTIP', 71, 1096), ('biotmle', 62, 1260), ('biovizBase', 5498, 78), ('BiRewire', 114, 735), ('birta', 16, 2328), ('birte', 6, 2571), ('biscuiteer', 62, 1235), ('BiSeq', 142, 609), ('BitSeq', 23, 2268), ('blacksheepr', 54, 1558), ('blima', 52, 1619), ('BLMA', 70, 1109), ('BloodGen3Module', 120, 700), ('bluster', 4788, 86), ('bnbc', 110, 758), ('bnem', 55, 1516), ('BOBaFIT', 58, 1390), ('borealis', 47, 1845), ('BPRMeth', 88, 921), ('BRAIN', 107, 777), ('brainflowprobes', 52, 1647), ('brainImageR', 2, 2702), ('BrainSABER', 7, 2540), ('BrainStars', 13, 2397), ('branchpointer', 69, 1115), ('breakpointR', 62, 1239), ('brendaDb', 45, 1970), ('BRGenomics', 155, 570), ('bridge', 17, 2321), ('BridgeDbR', 76, 1045), ('BrowserViz', 169, 529), ('BrowserVizDemo', 2, 2671), ('BSgenome', 13333, 49), ('BSgenomeForge', 85, 945), ('bsseq', 1422, 167), ('BubbleTree', 67, 1153), ('BufferedMatrix', 88, 915), ('BufferedMatrixMethods', 55, 1493), ('bugsigdbr', 164, 544), ('BUMHMM', 48, 1835), ('bumphunter', 2697, 123), ('BumpyMatrix', 547, 281), ('BUS', 56, 1474), ('BUScorrect', 45, 1927), ('BUSpaRse', 191, 492), ('BUSseq', 45, 1945)], 'C': [('CaDrA', 24, 2259), ('CAEN', 40, 2108), ('CAFE', 70, 1109), ('CAGEfightR', 151, 580), ('cageminer', 53, 1570), ('CAGEr', 113, 740), ('CALIB', 13, 2387), ('calm', 41, 2085), ('CAMERA', 482, 295), ('CAMTHC', 3, 2635), ('CaMutQC', 1, 2719), ('canceR', 84, 952), ('cancerclass', 75, 1058), ('CancerInSilico', 18, 2308), ('CancerMutationAnalysis', 14, 2375), ('CancerSubtypes', 122, 695), ('CAnD', 9, 2499), ('caOmicsV', 7, 2537), ('cardelino', 58, 1397), ('Cardinal', 161, 553), ('CardinalIO', 97, 860), ('CARNIVAL', 153, 573), ('casper', 58, 1367), ('CATALYST', 465, 305), ('Category', 1931, 140), ('categoryCompare', 66, 1178), ('CausalR', 60, 1303), ('cbaf', 60, 1325), ('CBEA', 103, 804), ('cBioPortalData', 445, 309), ('CBNplot', 128, 655), ('cbpManager', 50, 1748), ('ccfindR', 89, 909), ('ccImpute', 45, 1936), ('ccmap', 75, 1062), ('CCPlotR', 30, 2217), ('CCPROMISE', 60, 1309), ('ccrepe', 86, 937), ('CDI', 22, 2278), ('celaref', 67, 1145), ('celda', 640, 253), ('CellaRepertorium', 56, 1449), ('CellBarcode', 59, 1364), ('cellbaseR', 68, 1133), ('CellBench', 127, 663), ('cellGrowth', 12, 2438), ('cellHTS', 10, 2486), ('cellHTS2', 205, 476), ('CelliD', 247, 425), ('cellity', 62, 1249), ('CellMapper', 57, 1416), ('cellmigRation', 43, 2020), ('CellMixS', 78, 1020), ('CellNOptR', 191, 494), ('cellscape', 37, 2161), ('CellScore', 47, 1860), ('CellTrails', 52, 1638), ('cellTree', 14, 2378), ('cellxgenedp', 99, 843), ('CEMiTool', 136, 624), ('censcyt', 60, 1333), ('Cepo', 168, 531), ('ceRNAnetsim', 43, 2028), ('CeTF', 78, 1022), ('CexoR', 59, 1358), ('CFAssay', 48, 1821), ('cfdnakit', 35, 2174), ('cfDNAPro', 53, 1612), ('cfTools', 40, 2101), ('CGEN', 60, 1300), ('CGHbase', 444, 311), ('CGHcall', 406, 327), ('cghMCR', 65, 1196), ('CGHnormaliter', 64, 1216), ('CGHregions', 77, 1035), ('ChAMP', 569, 275), ('CHARGE', 5, 2597), ('charm', 14, 2378), ('ChemmineOB', 338, 360), ('ChemmineR', 909, 223), ('CHETAH', 93, 881), ('ChIC', 20, 2287), ('Chicago', 90, 902), ('chihaya', 52, 1655), ('chimera', 17, 2315), ('chimeraviz', 106, 780), ('ChIPanalyser', 50, 1722), ('ChIPComp', 59, 1364), ('chipenrich', 157, 564), ('ChIPexoQual', 61, 1267), ('ChIPpeakAnno', 984, 212), ('ChIPQC', 331, 365), ('ChIPseeker', 1778, 145), ('chipseq', 604, 262), ('ChIPseqR', 83, 960), ('ChIPSeqSpike', 8, 2521), ('ChIPsim', 85, 940), ('ChIPXpress', 96, 866), ('chopsticks', 87, 931), ('chroGPS', 13, 2419), ('chromDraw', 50, 1722), ('ChromHeatMap', 123, 683), ('ChromoViz', 1, 2726), ('chromPlot', 131, 645), ('ChromSCape', 62, 1247), ('chromstaR', 87, 929), ('chromswitch', 29, 2221), ('chromVAR', 1089, 201), ('CHRONOS', 54, 1532), ('cicero', 212, 461), ('CIMICE', 48, 1836), ('CINdex', 68, 1142), ('circRNAprofiler', 68, 1135), ('CircSeqAlignTk', 49, 1769), ('cisPath', 54, 1558), ('CiteFuse', 90, 897), ('ClassifyR', 278, 394), ('cleanUpdTSeq', 101, 826), ('cleaver', 191, 493), ('clevRvis', 45, 1936), ('clippda', 57, 1412), ('clipper', 98, 852), ('cliProfiler', 45, 1936), ('cliqueMS', 110, 761), ('Clomial', 50, 1711), ('Clonality', 32, 2199), ('clonotypeR', 18, 2310), ('clst', 90, 904), ('clstutils', 58, 1396), ('CluMSID', 62, 1260), ('ClustAll', 1, 2734), ('clustComp', 54, 1553), ('clusterExperiment', 350, 352), ('ClusterFoldSimilarity', 3, 2632), ('ClusterJudge', 51, 1696), ('clusterProfiler', 17139, 37), ('clusterSeq', 35, 2177), ('ClusterSignificance', 51, 1661), ('clusterStab', 77, 1029), ('clustifyr', 130, 652), ('ClustIRR', 22, 2273), ('CMA', 111, 753), ('cmapR', 396, 334), ('cn.farms', 61, 1274), ('cn.mops', 269, 405), ('CNAnorm', 61, 1288), ('CNEr', 3138, 111), ('CNORdt', 62, 1241), ('CNORfeeder', 66, 1179), ('CNORfuzzy', 63, 1227), ('CNORode', 90, 895), ('CNPBayes', 6, 2564), ('CNTools', 129, 654), ('CNVfilteR', 56, 1481), ('CNVgears', 29, 2221), ('cnvGSA', 61, 1296), ('CNViz', 50, 1742), ('CNVMetrics', 46, 1923), ('CNVPanelizer', 60, 1306), ('CNVRanger', 123, 690), ('CNVrd2', 59, 1353), ('CNVtools', 11, 2452), ('cobindR', 12, 2434), ('CoCiteStats', 51, 1704), ('COCOA', 65, 1189), ('codelink', 70, 1105), ('CODEX', 102, 823), ('coexnet', 13, 2397), ('CoGAPS', 244, 431), ('cogena', 82, 966), ('cogeqc', 64, 1203), ('Cogito', 43, 2012), ('coGPS', 52, 1628), ('COHCAP', 62, 1265), ('cola', 123, 690), ('comapr', 58, 1390), ('combi', 54, 1527), ('coMET', 93, 882), ('coMethDMR', 51, 1677), ('compartmap', 36, 2169), ('COMPASS', 72, 1089), ('compcodeR', 81, 979), ('compEpiTools', 67, 1150), ('CompGO', 12, 2430), ('ComplexHeatmap', 13719, 48), ('CompoundDb', 350, 353), ('ComPrAn', 38, 2143), ('compSPOT', 18, 2305), ('conclus', 6, 2572), ('concordexR', 63, 1234), ('condcomp', 2, 2685), ('condiments', 84, 954), ('CONFESS', 57, 1412), ('consensus', 47, 1872), ('ConsensusClusterPlus', 2958, 116), ('consensusDE', 64, 1212), ('consensusOV', 108, 776), ('consensusSeekeR', 100, 836), ('consICA', 104, 798), ('CONSTANd', 45, 1936), ('contiBAIT', 54, 1558), ('conumee', 152, 575), ('convert', 145, 602), ('copa', 54, 1532), ('COPDSexualDimorphism', 2, 2663), ('copynumber', 151, 579), ('CopyNumber450k', 6, 2558), ('CopyNumberPlots', 153, 574), ('CopywriteR', 24, 2255), ('coRdon', 166, 538), ('CoRegFlux', 2, 2663), ('CoRegNet', 49, 1764), ('CoreGx', 367, 347), ('Cormotif', 53, 1612), ('CorMut', 12, 2434), ('coRNAi', 10, 2467), ('corral', 72, 1082), ('CORREP', 55, 1516), ('coseq', 109, 769), ('CoSIA', 44, 1982), ('cosmiq', 54, 1527), ('cosmo', 2, 2663), ('cosmoGUI', 2, 2663), ('cosmosR', 68, 1141), ('COSNet', 52, 1655), ('COTAN', 76, 1047), ('CountClust', 11, 2461), ('countsimQC', 136, 627), ('covEB', 47, 1867), ('CoverageView', 64, 1207), ('covRNA', 52, 1628), ('cpvSNP', 54, 1568), ('cqn', 279, 393), ('CRImage', 76, 1040), ('CRISPRball', 3, 2626), ('crisprBase', 156, 569), ('crisprBowtie', 148, 589), ('crisprBwa', 57, 1442), ('crisprDesign', 128, 657), ('crisprScore', 162, 551), ('CRISPRseek', 158, 561), ('crisprseekplus', 30, 2213), ('crisprShiny', 2, 2671), ('CrispRVariants', 136, 630), ('crisprVerse', 64, 1207), ('crisprViz', 113, 745), ('crlmm', 238, 434), ('CrossICC', 2, 2675), ('crossmeta', 149, 582), ('CSAR', 77, 1032), ('csaw', 585, 268), ('csdR', 43, 2033), ('CSSP', 32, 2198), ('CSSQ', 45, 1964), ('ctc', 281, 392), ('CTdata', 42, 2041), ('CTDquerier', 50, 1737), ('CTexploreR', 3, 2639), ('ctgGEM', 4, 2610), ('cTRAP', 57, 1422), ('ctsGE', 52, 1634), ('CTSV', 48, 1830), ('cummeRbund', 236, 438), ('CuratedAtlasQueryR', 33, 2187), ('customCMPdb', 49, 1786), ('customProDB', 79, 996), ('CVE', 5, 2593), ('cyanoFilter', 48, 1826), ('cycle', 57, 1422), ('cydar', 81, 979), ('cypress', 1, 2730), ('CytoDx', 63, 1224), ('cytofast', 5, 2595), ('cytofkit', 25, 2247), ('CyTOFpower', 53, 1593), ('cytofQC', 49, 1788), ('CytoGLMM', 92, 888), ('cytoKernel', 41, 2080), ('cytolib', 2789, 121), ('cytomapper', 311, 375), ('CytoMDS', 1, 2719), ('cytoMEM', 88, 923), ('CytoML', 470, 302), ('CytoPipeline', 84, 954), ('CytoPipelineGUI', 19, 2300), ('CytoTree', 16, 2331), ('cytoviewer', 87, 929)], 'D': [('dada2', 2168, 133), ('dagLogo', 78, 1013), ('daMA', 54, 1541), ('DAMEfinder', 53, 1612), ('DaMiRseq', 114, 738), ('DAPAR', 126, 666), ('dar', 3, 2644), ('DART', 60, 1317), ('DASC', 1, 2734), ('DASiR', 7, 2547), ('dasper', 21, 2281), ('DAVIDQuery', 6, 2564), ('DBChIP', 15, 2356), ('dcanr', 112, 749), ('DCATS', 29, 2223), ('dce', 66, 1162), ('dcGSA', 48, 1821), ('DChIPRep', 8, 2519), ('ddCt', 89, 906), ('ddgraph', 9, 2489), ('ddPCRclust', 67, 1149), ('dearseq', 165, 541), ('debCAM', 60, 1333), ('debrowser', 175, 518), ('DECIPHER', 2741, 122), ('deco', 9, 2489), ('DEComplexDisease', 10, 2480), ('decompTumor2Sig', 124, 682), ('DeconRNASeq', 214, 459), ('decontam', 1605, 158), ('decontX', 79, 1008), ('deconvR', 63, 1231), ('decoupleR', 968, 214), ('DEDS', 13, 2402), ('DeepBlueR', 50, 1748), ('DeepPINCS', 78, 1022), ('deepSNV', 160, 554), ('DEFormats', 254, 417), ('DegCre', 1, 2719), ('DegNorm', 54, 1541), ('DEGraph', 66, 1176), ('DEGreport', 572, 273), ('DEGseq', 160, 555), ('DelayedArray', 42706, 10), ('DelayedDataFrame', 59, 1343), ('DelayedMatrixStats', 15979, 43), ('DelayedRandomArray', 83, 959), ('DelayedTensor', 45, 1945), ('DELocal', 44, 2000), ('deltaCaptureC', 49, 1758), ('deltaGseg', 51, 1687), ('DeMAND', 48, 1816), ('DeMixT', 93, 882), ('demuxmix', 205, 475), ('demuxSNP', 32, 2203), ('densvis', 3274, 107), ('DEP', 478, 299), ('DepecheR', 149, 585), ('DepInfeR', 41, 2075), ('DeProViR', 2, 2661), ('DEqMS', 218, 456), ('derfinder', 580, 270), ('derfinderHelper', 578, 272), ('derfinderPlot', 147, 595), ('DEScan2', 61, 1274), ('DESeq', 227, 445), ('DESeq2', 21212, 26), ('DEsingle', 248, 421), ('DESpace', 49, 1753), ('destiny', 687, 245), ('DEsubs', 56, 1453), ('DEWSeq', 56, 1449), ('DExMA', 59, 1343), ('DEXSeq', 1479, 162), ('dexus', 16, 2327), ('DFP', 51, 1698), ('DIAlignR', 53, 1593), ('DiffBind', 1038, 206), ('diffcoexp', 177, 512), ('diffcyt', 343, 358), ('DifferentialRegulation', 49, 1753), ('diffGeneAnalysis', 50, 1731), ('diffHic', 105, 795), ('DiffLogo', 61, 1285), ('diffloop', 30, 2215), ('diffuStats', 62, 1249), ('diffUTR', 46, 1923), ('diggit', 51, 1696), ('Dino', 52, 1652), ('dinoR', 2, 2697), ('dir.expiry', 4197, 94), ('Director', 41, 2098), ('DirichletMultinomial', 4412, 90), ('discordant', 79, 1005), ('DiscoRhythm', 58, 1367), ('distinct', 210, 466), ('dittoSeq', 1335, 171), ('divergence', 40, 2104), ('dks', 47, 1872), ('DMCFB', 39, 2134), ('DMCHMM', 49, 1780), ('DMRcaller', 77, 1025), ('DMRcate', 831, 232), ('DMRforPairs', 33, 2184), ('DMRScan', 45, 1961), ('dmrseq', 195, 487), ('DNABarcodeCompatibility', 42, 2062), ('DNABarcodes', 167, 535), ('DNAcopy', 5247, 81), ('DNAfusion', 44, 1982), ('DNaseR', 4, 2611), ('DNAshapeR', 72, 1086), ('domainsignatures', 10, 2471), ('DominoEffect', 52, 1623), ('doppelgangR', 117, 724), ('DOQTL', 9, 2505), ('Doscheda', 56, 1474), ('DOSE', 16749, 39), ('doseR', 43, 2017), ('doubletrouble', 56, 1449), ('dpeak', 26, 2236), ('drawProteins', 181, 505), ('dreamlet', 33, 2192), ('DRIMSeq', 312, 374), ('DriverNet', 55, 1524), ('DropletUtils', 2609, 126), ('drugTargetInteractions', 55, 1493), ('DrugVsDisease', 117, 722), ('dSimer', 6, 2564), ('DSS', 966, 215), ('dStruct', 42, 2055), ('DTA', 85, 947), ('dualKS', 15, 2358), ('Dune', 44, 2000), ('DupChecker', 5, 2598), ('dupRadar', 102, 818), ('dyebias', 56, 1474), ('DynDoc', 1247, 179)], 'E': [('easier', 133, 642), ('EasyCellType', 49, 1773), ('easylift', 24, 2263), ('EasyqpcR', 15, 2340), ('easyreporting', 48, 1830), ('easyRNASeq', 176, 516), ('EBarrays', 221, 452), ('EBcoexpress', 73, 1073), ('EBImage', 2667, 125), ('EBSEA', 51, 1704), ('EBSeq', 412, 325), ('EBSeqHMM', 54, 1552), ('ecolitk', 55, 1493), ('EDASeq', 1777, 146), ('edd', 2, 2663), ('EDDA', 15, 2347), ('edge', 96, 869), ('edgeR', 22678, 25), ('EDIRquery', 35, 2173), ('eds', 335, 363), ('eegc', 80, 987), ('EGAD', 60, 1321), ('EGSEA', 137, 622), ('eiR', 62, 1235), ('eisa', 14, 2383), ('eisaR', 100, 842), ('ELBOW', 13, 2394), ('ELMER', 174, 524), ('EMDomics', 64, 1216), ('EmpiricalBrownsMethod', 126, 669), ('ENCODExplorer', 7, 2534), ('EnhancedVolcano', 4166, 95), ('enhancerHomologSearch', 53, 1609), ('EnMCB', 46, 1892), ('ENmix', 199, 486), ('EnrichedHeatmap', 551, 280), ('EnrichmentBrowser', 553, 278), ('enrichplot', 16953, 38), ('enrichTF', 77, 1027), ('enrichViewNet', 32, 2202), ('ensembldb', 9833, 62), ('ensemblVEP', 163, 548), ('ENVISIONQuery', 12, 2438), ('epialleleR', 53, 1573), ('EpiCompare', 52, 1628), ('epidecodeR', 42, 2038), ('EpiDISH', 558, 276), ('epigenomix', 57, 1440), ('epigraHMM', 51, 1661), ('epihet', 9, 2503), ('EpiMix', 42, 2055), ('epimutacions', 58, 1405), ('epiNEM', 139, 615), ('epistack', 48, 1842), ('epistasisGA', 38, 2154), ('EpiTxDb', 81, 975), ('epivizr', 115, 728), ('epivizrChart', 52, 1640), ('epivizrData', 126, 670), ('epivizrServer', 144, 603), ('epivizrStandalone', 61, 1292), ('erccdashboard', 62, 1247), ('erma', 94, 878), ('ERSSA', 49, 1764), ('esATAC', 93, 880), ('escape', 323, 369), ('escheR', 104, 800), ('esetVis', 75, 1054), ('eudysbiome', 43, 2012), ('evaluomeR', 51, 1669), ('EventPointer', 61, 1288), ('EWCE', 137, 623), ('ExCluster', 43, 2028), ('ExiMiR', 55, 1510), ('exomeCopy', 310, 376), ('exomePeak', 19, 2302), ('exomePeak2', 101, 830), ('exonmap', 2, 2675), ('ExperimentHub', 7350, 71), ('ExperimentHubData', 297, 382), ('ExperimentSubset', 51, 1671), ('explorase', 12, 2423), ('ExploreModelMatrix', 147, 592), ('ExpressionAtlas', 158, 562), ('ExpressionView', 14, 2371), ('exprExternal', 0, 2759), ('externalVector', 2, 2702), ('extraChIPs', 60, 1313)], 'F': [('fabia', 175, 520), ('facopy', 4, 2604), ('factDesign', 53, 1612), ('factR', 49, 1769), ('faers', 3, 2650), ('FamAgg', 70, 1114), ('famat', 55, 1506), ('farms', 49, 1788), ('fastLiquidAssociation', 54, 1547), ('FastqCleaner', 81, 977), ('fastreeR', 65, 1186), ('fastseg', 743, 236), ('fbat', 2, 2692), ('FCBF', 53, 1612), ('fCCAC', 51, 1698), ('fCI', 47, 1848), ('fcoex', 80, 989), ('fcScan', 50, 1719), ('fdrame', 49, 1753), ('FEAST', 109, 771), ('FeatSeekR', 41, 2090), ('fedup', 46, 1904), ('FELLA', 125, 672), ('FEM', 22, 2272), ('fenr', 24, 2259), ('ffpe', 68, 1144), ('fgga', 44, 1993), ('FGNet', 111, 757), ('fgsea', 16241, 42), ('FilterFFPE', 43, 2034), ('FindIT2', 52, 1652), ('FindMyFriends', 10, 2487), ('FISHalyseR', 47, 1845), ('fishpond', 278, 395), ('FitHiC', 59, 1349), ('flagme', 55, 1502), ('FLAMES', 73, 1071), ('flipflop', 12, 2431), ('flowAI', 557, 277), ('flowBeads', 58, 1385), ('flowBin', 66, 1183), ('flowcatchR', 54, 1541), ('flowCHIC', 57, 1428), ('flowCL', 18, 2310), ('flowClean', 209, 469), ('flowClust', 841, 231), ('flowCore', 2841, 120), ('flowCut', 98, 855), ('flowCyBar', 51, 1704), ('flowDensity', 261, 408), ('flowFit', 14, 2367), ('flowFlowJo', 5, 2584), ('flowFP', 152, 577), ('flowGate', 65, 1199), ('flowGraph', 47, 1881), ('flowMap', 47, 1867), ('flowMatch', 66, 1172), ('flowMeans', 158, 560), ('flowMerge', 134, 638), ('flowPeaks', 175, 519), ('flowPhyto', 4, 2608), ('flowPloidy', 61, 1269), ('flowPlots', 52, 1619), ('flowQ', 8, 2510), ('flowQB', 15, 2338), ('FlowRepositoryR', 8, 2512), ('FlowSOM', 1077, 202), ('flowSpecs', 65, 1196), ('flowSpy', 3, 2626), ('flowStats', 526, 282), ('flowTime', 60, 1317), ('flowTrans', 79, 1004), ('flowType', 15, 2358), ('flowUtils', 42, 2041), ('flowViz', 1055, 204), ('flowVS', 98, 856), ('flowWorkspace', 1290, 173), ('fmcsR', 258, 411), ('fmrs', 114, 734), ('fobitools', 46, 1916), ('focalCall', 5, 2589), ('FoldGO', 33, 2195), ('FourCSeq', 10, 2480), ('FRASER', 106, 787), ('frenchFISH', 38, 2149), ('FRGEpistasis', 53, 1595), ('frma', 149, 588), ('frmaTools', 69, 1125), ('FScanR', 23, 2265), ('FunChIP', 61, 1269), ('FunciSNP', 13, 2419), ('funtooNorm', 58, 1385), ('FuseSOM', 48, 1805)], 'G': [('GA4GHclient', 106, 789), ('GA4GHshiny', 61, 1285), ('gaga', 99, 845), ('gage', 811, 233), ('gaggle', 50, 1748), ('gaia', 27, 2231), ('GAPGOM', 7, 2534), ('GAprediction', 47, 1855), ('garfield', 51, 1681), ('GARS', 54, 1535), ('GateFinder', 55, 1511), ('gatom', 26, 2240), ('gaucho', 10, 2476), ('GBScleanR', 39, 2124), ('gcapc', 54, 1558), ('gcatest', 48, 1816), ('gCMAP', 15, 2358), ('gCMAPWeb', 12, 2423), ('gCrisprTools', 56, 1469), ('gcrma', 1395, 169), ('GCSConnection', 4, 2606), ('GCSFilesystem', 5, 2593), ('GCSscore', 27, 2233), ('GDCRNATools', 292, 384), ('gDNAx', 38, 2143), ('gDR', 26, 2237), ('gDRcore', 69, 1125), ('gDRimport', 71, 1100), ('gDRstyle', 56, 1463), ('gDRutils', 91, 893), ('GDSArray', 125, 671), ('gdsfmt', 2094, 136), ('geecc', 6, 2558), ('GEM', 53, 1595), ('gemini', 47, 1864), ('gemma.R', 53, 1585), ('genArise', 51, 1669), ('genbankr', 131, 647), ('GENE.E', 11, 2461), ('gene2pathway', 2, 2654), ('GeneAccord', 9, 2507), ('GeneAnswers', 24, 2251), ('geneAttribution', 49, 1761), ('GeneBreak', 67, 1157), ('geneClassifiers', 48, 1830), ('GeneExpressionSignature', 64, 1220), ('genefilter', 12982, 50), ('genefu', 419, 324), ('GeneGA', 40, 2104), ('GeneGeneInteR', 51, 1698), ('GeneGroupAnalysis', 2, 2692), ('GeneMeta', 97, 862), ('GeneNetworkBuilder', 71, 1096), ('GeneOverlap', 405, 329), ('geneplast', 89, 906), ('geneplotter', 7694, 70), ('GeneR', 3, 2635), ('geneRecommender', 51, 1676), ('GeneRegionScan', 60, 1321), ('GeneRfold', 1, 2734), ('geneRxCluster', 52, 1643), ('GeneSelectMMD', 102, 822), ('GeneSelector', 13, 2410), ('GENESIS', 339, 359), ('GeneSpring', 2, 2671), ('GeneStructureTools', 78, 1018), ('geNetClassifier', 146, 598), ('GeneticsBase', 2, 2692), ('GeneticsDesign', 12, 2434), ('GeneticsPed', 98, 857), ('GeneTonic', 255, 415), ('GeneTraffic', 2, 2681), ('GeneTS', 1, 2706), ('geneXtendeR', 106, 783), ('GENIE3', 1167, 191), ('genoCN', 52, 1645), ('GenoGAM', 9, 2493), ('genomation', 625, 258), ('GenomAutomorphism', 37, 2160), ('GenomeBase', 0, 2755), ('GenomeGraphs', 17, 2315), ('GenomeInfoDb', 56036, 2), ('genomeIntervals', 178, 511), ('genomes', 62, 1257), ('GenomicAlignments', 23522, 22), ('GenomicDataCommons', 1207, 184), ('GenomicDistributions', 86, 934), ('GenomicFeatures', 19716, 30), ('GenomicFiles', 1289, 174), ('genomicInstability', 45, 1964), ('GenomicInteractionNodes', 44, 2004), ('GenomicInteractions', 345, 354), ('GenomicOZone', 57, 1416), ('GenomicPlot', 39, 2124), ('GenomicRanges', 41289, 12), ('GenomicScores', 636, 254), ('GenomicSuperSignature', 51, 1658), ('GenomicTuples', 47, 1881), ('Genominator', 15, 2358), ('genoset', 22, 2276), ('genotypeeval', 15, 2337), ('GenoView', 1, 2734), ('genphen', 8, 2515), ('GenProSeq', 37, 2158), ('GenRank', 5, 2584), ('GenVisR', 293, 383), ('GeoDiff', 75, 1050), ('GEOexplorer', 57, 1437), ('GEOfastq', 60, 1325), ('GEOmetadb', 228, 443), ('GeomxTools', 397, 333), ('GEOquery', 8968, 66), ('GEOsearch', 3, 2635), ('GEOsubmission', 53, 1595), ('GeoTcgaData', 60, 1328), ('gep2pep', 55, 1518), ('gespeR', 82, 965), ('getDEE2', 44, 1976), ('geva', 39, 2119), ('GEWIST', 46, 1911), ('gff3Plotter', 1, 2748), ('gg4way', 23, 2267), ('GGBase', 16, 2333), ('ggbio', 2144, 134), ('ggcyto', 907, 224), ('ggkegg', 141, 613), ('ggmanh', 106, 780), ('ggmsa', 496, 290), ('GGPA', 42, 2051), ('ggsc', 31, 2209), ('ggspavis', 130, 649), ('GGtools', 18, 2309), ('ggtree', 19782, 29), ('ggtreeDendro', 56, 1455), ('ggtreeExtra', 996, 209), ('GIGSEA', 42, 2049), ('ginmappeR', 1, 2730), ('girafe', 90, 898), ('GISPA', 49, 1780), ('GLAD', 230, 441), ('GladiaTOX', 42, 2065), ('Glimma', 1234, 181), ('glmGamPoi', 3722, 99), ('glmSparseNet', 139, 616), ('GlobalAncova', 985, 211), ('globalSeq', 49, 1761), ('globaltest', 1717, 149), ('GloScope', 20, 2288), ('gmapR', 162, 549), ('GmicR', 64, 1212), ('gmoviz', 48, 1794), ('GMRP', 49, 1778), ('GNET2', 49, 1784), ('GNOSIS', 28, 2228), ('goCluster', 0, 2757), ('GOexpress', 85, 946), ('GOfuncR', 286, 389), ('GOFunction', 14, 2383), ('GoogleGenomics', 5, 2592), ('GOpro', 116, 725), ('goProfiles', 122, 693), ('GOSemSim', 16394, 41), ('goseq', 1214, 183), ('GOSim', 127, 661), ('goSorensen', 49, 1773), ('goSTAG', 57, 1431), ('GOstats', 1743, 148), ('GOsummaries', 60, 1333), ('GOTHiC', 86, 936), ('goTools', 62, 1239), ('GPA', 47, 1886), ('gpart', 15, 2356), ('gpls', 164, 545), ('gprege', 13, 2412), ('gpuMagic', 48, 1830), ('gQTLBase', 11, 2461), ('gQTLstats', 9, 2501), ('GrafGen', 1, 2719), ('gramm4R', 3, 2635), ('GRaNIE', 128, 655), ('granulator', 115, 728), ('graper', 45, 1955), ('graph', 18301, 35), ('GraphAlignment', 53, 1585), ('GraphAT', 54, 1558), ('graphite', 2930, 117), ('GraphPAC', 98, 849), ('GRENITS', 52, 1628), ('GreyListChIP', 961, 218), ('GRmetrics', 80, 993), ('groHMM', 66, 1164), ('GRridge', 16, 2328), ('GSALightning', 49, 1753), ('GSAR', 85, 941), ('GSCA', 56, 1459), ('gscreend', 44, 1988), ('GSEABase', 8515, 67), ('GSEABenchmarkeR', 78, 1019), ('GSEAlm', 75, 1056), ('GSEAmining', 62, 1252), ('gsean', 58, 1408), ('GSgalgoR', 43, 2007), ('GSReg', 59, 1358), ('GSRI', 58, 1397), ('GSVA', 5800, 76), ('gtrellis', 127, 660), ('GUIDEseq', 74, 1067), ('Guitar', 135, 631), ('Gviz', 3899, 96), ('GWAS.BAYES', 47, 1872), ('gwascat', 600, 265), ('GWASTools', 605, 261), ('gwasurvivr', 79, 1002), ('GWENA', 174, 526), ('gypsum', 78, 1015)], 'H': [('h5vc', 77, 1025), ('hapFabia', 53, 1577), ('Harman', 165, 540), ('HarmonizR', 31, 2205), ('Harshlight', 67, 1155), ('hca', 61, 1292), ('HCABrowser', 4, 2623), ('HCAExplorer', 2, 2671), ('HCAMatrixBrowser', 2, 2692), ('HCsnip', 10, 2480), ('HDF5Array', 12420, 51), ('HDTD', 45, 1927), ('heatmaps', 242, 432), ('Heatplus', 398, 332), ('HelloRanges', 131, 646), ('HELP', 54, 1535), ('HEM', 51, 1704), ('hermes', 91, 894), ('HERON', 22, 2273), ('Herper', 156, 565), ('hexbin', 21, 2283), ('HGC', 58, 1397), ('hiAnnotator', 105, 795), ('HIBAG', 124, 676), ('HiCBricks', 146, 597), ('HiCcompare', 287, 388), ('HiCDCPlus', 73, 1076), ('HiCDOC', 102, 824), ('HiCExperiment', 128, 659), ('HiContacts', 96, 865), ('HiCool', 58, 1390), ('hicrep', 10, 2471), ('hicVennDiagram', 24, 2256), ('hierGWAS', 53, 1600), ('hierinf', 41, 2085), ('HilbertCurve', 80, 993), ('HilbertVis', 171, 527), ('HilbertVisGUI', 35, 2171), ('HiLDA', 66, 1172), ('hipathia', 124, 679), ('HIPPO', 45, 1959), ('hiReadsProcessor', 55, 1506), ('HIREewas', 46, 1911), ('HiTC', 134, 634), ('hmdbQuery', 69, 1118), ('HMMcopy', 262, 407), ('hoodscanR', 28, 2228), ('hopach', 306, 381), ('HPAanalyze', 118, 716), ('hpar', 275, 399), ('HPAStainR', 18, 2313), ('HPiP', 46, 1908), ('HTqPCR', 170, 528), ('HTSanalyzeR', 15, 2344), ('HTSeqGenie', 55, 1489), ('htSeqTools', 14, 2367), ('HTSFilter', 224, 448), ('HubPub', 110, 760), ('HumanTranscriptomeCompendium', 51, 1687), ('hummingbird', 43, 2007), ('HybridExpress', 1, 2712), ('HybridMTest', 127, 661), ('hypeR', 68, 1135), ('hyperdraw', 110, 761), ('hypergraph', 156, 568)], 'I': [('iASeq', 48, 1802), ('iasva', 47, 1872), ('iBBiG', 120, 703), ('ibh', 56, 1465), ('iBMQ', 45, 1936), ('iCARE', 105, 793), ('Icens', 439, 314), ('icetea', 50, 1719), ('iCheck', 51, 1692), ('iChip', 50, 1726), ('iClusterPlus', 327, 366), ('iCNV', 50, 1716), ('iCOBRA', 165, 543), ('ideal', 115, 726), ('IdeoViz', 65, 1195), ('idiogram', 55, 1487), ('IdMappingAnalysis', 11, 2453), ('IdMappingRetrieval', 13, 2416), ('idpr', 63, 1232), ('idr2d', 49, 1780), ('IFAA', 47, 1853), ('iFlow', 2, 2687), ('iGC', 47, 1855), ('IgGeneUsage', 44, 1997), ('igvR', 105, 792), ('igvShiny', 3, 2626), ('IHW', 713, 241), ('illuminaio', 2909, 118), ('ILoReg', 41, 2072), ('imageHTS', 22, 2270), ('IMAS', 55, 1518), ('imcRtools', 183, 499), ('Imetagene', 7, 2547), ('IMMAN', 46, 1908), ('ImmuneSpaceR', 65, 1199), ('immunoClust', 61, 1279), ('immunotation', 46, 1914), ('IMPCdata', 45, 1951), ('ImpulseDE', 5, 2589), ('ImpulseDE2', 11, 2453), ('impute', 10300, 57), ('INDEED', 42, 2067), ('iNETgrate', 33, 2186), ('infercnv', 1055, 203), ('infinityFlow', 63, 1228), ('Informeasure', 35, 2180), ('InPAS', 55, 1489), ('INPower', 53, 1599), ('inSilicoDb', 11, 2449), ('inSilicoMerging', 13, 2394), ('INSPEcT', 66, 1176), ('INTACT', 42, 2060), ('InTAD', 49, 1773), ('intansv', 77, 1027), ('interacCircos', 56, 1455), ('InteractionSet', 1846, 142), ('InteractiveComplexHeatmap', 368, 346), ('interactiveDisplay', 99, 844), ('interactiveDisplayBase', 10273, 58), ('InterCellar', 74, 1068), ('IntEREst', 64, 1212), ('InterMineR', 61, 1282), ('IntOMICS', 39, 2130), ('IntramiRExploreR', 45, 1927), ('inveRsion', 15, 2345), ('IONiseR', 67, 1150), ('iontree', 10, 2467), ('iPAC', 125, 674), ('iPath', 41, 2080), ('ipdDb', 101, 834), ('IPO', 118, 714), ('IPPD', 12, 2423), ('IRanges', 50252, 5), ('IRISFGM', 81, 982), ('IrisSpatialFeatures', 2, 2656), ('ISAnalytics', 51, 1704), ('iSEE', 455, 307), ('iSEEde', 34, 2182), ('iSEEfier', 1, 2726), ('iSEEhex', 140, 614), ('iSEEhub', 102, 824), ('iSEEindex', 32, 2200), ('iSEEpathways', 28, 2228), ('iSEEu', 107, 777), ('iSeq', 50, 1748), ('ISLET', 44, 1993), ('iSNetwork', 1, 2719), ('isobar', 79, 1005), ('IsoBayes', 19, 2294), ('IsoCorrectoR', 92, 890), ('IsoCorrectoRGUI', 53, 1570), ('IsoformSwitchAnalyzeR', 255, 414), ('IsoGeneGUI', 14, 2364), ('ISoLDE', 41, 2090), ('isomiRs', 123, 687), ('iSPlot', 1, 2712), ('ITALICS', 58, 1408), ('iterativeBMA', 55, 1524), ('iterativeBMAsurv', 50, 1744), ('iterClust', 48, 1810), ('iteremoval', 7, 2540), ('IVAS', 76, 1047), ('ivygapSE', 45, 1945), ('IWTomics', 48, 1810)], 'J': [('jmosaics', 6, 2568), ('joda', 13, 2419), ('JunctionSeq', 12, 2448)], 'K': [('karyoploteR', 885, 226), ('katdetectr', 50, 1712), ('KBoost', 41, 2095), ('KCsmart', 60, 1309), ('kebabs', 142, 608), ('KEGGgraph', 5516, 77), ('KEGGlincs', 66, 1183), ('keggorth', 1, 2734), ('keggorthology', 139, 617), ('KEGGprofile', 22, 2278), ('KEGGREST', 34998, 16), ('KEGGSOAP', 4, 2602), ('kimod', 5, 2580), ('KinSwingR', 50, 1737), ('kissDE', 54, 1535), ('KnowSeq', 53, 1573), ('knowYourCG', 1, 2734)], 'L': [('LACE', 106, 784), ('lapmix', 48, 1810), ('LBE', 244, 429), ('ldblock', 76, 1047), ('LEA', 516, 283), ('LedPred', 43, 2023), ('lefser', 579, 271), ('lemur', 41, 2090), ('les', 90, 895), ('levi', 42, 2051), ('lfa', 282, 391), ('limma', 31365, 18), ('limmaGUI', 68, 1138), ('LINC', 7, 2551), ('LineagePulse', 44, 1993), ('lineagespot', 42, 2038), ('LinkHD', 48, 1821), ('Linnorm', 216, 458), ('LinTInd', 47, 1848), ('lionessR', 48, 1810), ('lipidr', 186, 496), ('LiquidAssociation', 78, 1015), ('lisaClust', 131, 647), ('lmdme', 51, 1671), ('LMGene', 13, 2406), ('LOBSTAHS', 53, 1585), ('loci2path', 45, 1945), ('logicFS', 83, 963), ('logitT', 36, 2164), ('Logolas', 7, 2545), ('lol', 10, 2484), ('LOLA', 288, 386), ('LoomExperiment', 582, 269), ('LowMACA', 17, 2315), ('LPE', 85, 947), ('LPEadj', 47, 1872), ('lpNet', 60, 1306), ('lpsymphony', 1177, 189), ('LRBaseDbi', 110, 766), ('LRcell', 51, 1677), ('lumi', 1132, 198), ('lute', 4, 2618), ('LVSmiRNA', 13, 2387), ('LymphoSeq', 59, 1346)], 'M': [('M3C', 694, 244), ('M3D', 7, 2540), ('M3Drop', 586, 267), ('m6Aboost', 38, 2141), ('maanova', 21, 2285), ('Maaslin2', 990, 210), ('Macarron', 50, 1731), ('macat', 58, 1385), ('maCorrPlot', 51, 1698), ('MACPET', 8, 2510), ('MACSQuantifyR', 40, 2102), ('MACSr', 106, 782), ('maDB', 3, 2650), ('made4', 235, 439), ('MADSEQ', 51, 1661), ('maftools', 2564, 127), ('MAGAR', 152, 576), ('MAGeCKFlute', 364, 349), ('magpie', 43, 2007), ('magrene', 42, 2067), ('MAI', 50, 1719), ('maigesPack', 44, 1976), ('MAIT', 57, 1422), ('makecdfenv', 167, 532), ('makePlatformDesign', 2, 2702), ('MANOR', 52, 1634), ('manta', 14, 2373), ('MantelCorr', 45, 1934), ('mAPKL', 12, 2443), ('maPredictDSC', 57, 1437), ('mapscape', 48, 1826), ('mariner', 57, 1435), ('marr', 41, 2082), ('marray', 1891, 141), ('martini', 51, 1687), ('maser', 123, 687), ('maSigPro', 253, 418), ('maskBAD', 57, 1428), ('MassArray', 49, 1769), ('massiR', 56, 1455), ('MassSpecWavelet', 1816, 144), ('MAST', 2031, 138), ('mastR', 100, 837), ('matchBox', 51, 1677), ('matchprobes', 2, 2697), ('MatrixGenerics', 39135, 13), ('MatrixQCvis', 117, 722), ('MatrixRider', 58, 1385), ('matter', 203, 480), ('MaxContrastProjection', 8, 2522), ('MBAmethyl', 38, 2139), ('MBASED', 56, 1465), ('MBCB', 50, 1710), ('MBECS', 59, 1347), ('mbkmeans', 448, 308), ('mbOmic', 17, 2318), ('mBPCR', 56, 1455), ('MBQN', 50, 1744), ('mbQTL', 43, 2012), ('MBttest', 48, 1842), ('mcaGUI', 13, 2412), ('MCbiclust', 49, 1764), ('MCRestimate', 12, 2423), ('mCSEA', 106, 785), ('mdgsa', 9, 2507), ('mdp', 52, 1647), ('mdqc', 98, 854), ('MDTS', 49, 1758), ('MEAL', 77, 1032), ('MeasurementError.cor', 46, 1918), ('MEAT', 41, 2077), ('MEB', 44, 1988), ('MEDIPS', 106, 787), ('MEDME', 52, 1647), ('megadepth', 120, 702), ('MEIGOR', 53, 1609), ('Melissa', 47, 1860), ('memes', 183, 500), ('MergeMaid', 15, 2347), ('Mergeomics', 59, 1355), ('MeSHDbi', 250, 420), ('meshes', 146, 600), ('meshr', 137, 621), ('MeSHSim', 2, 2692), ('MesKit', 66, 1164), ('messina', 52, 1638), ('metaArray', 13, 2394), ('Metab', 31, 2211), ('metabCombiner', 47, 1886), ('metabinR', 38, 2143), ('MetaboAnnotation', 307, 380), ('MetaboCoreUtils', 1153, 194), ('metabolomicsWorkbenchR', 74, 1070), ('metabomxtr', 51, 1687), ('MetaboSignal', 115, 727), ('metaCCA', 192, 491), ('MetaCyto', 71, 1102), ('metagene', 36, 2167), ('metagene2', 65, 1192), ('metagenomeFeatures', 8, 2522), ('metagenomeSeq', 1643, 151), ('metahdep', 55, 1493), ('metaMS', 100, 837), ('MetaNeighbor', 90, 905), ('MetaPhOR', 50, 1712), ('metapod', 4613, 89), ('metapone', 61, 1292), ('metaSeq', 63, 1224), ('metaseqR', 18, 2312), ('metaseqR2', 46, 1904), ('metavizr', 12, 2423), ('MetaVolcanoR', 61, 1288), ('metaX', 2, 2685), ('MetCirc', 66, 1168), ('MethCP', 8, 2518), ('methimpute', 55, 1521), ('methInheritSim', 60, 1321), ('methodical', 3, 2644), ('MethPed', 49, 1769), ('MethReg', 68, 1133), ('methrix', 77, 1037), ('MethTargetedNGS', 47, 1867), ('methVisual', 13, 2412), ('methyAnalysis', 19, 2302), ('MethylAid', 87, 928), ('methylCC', 69, 1121), ('methylclock', 146, 596), ('methylGSA', 104, 799), ('methyLImp2', 1, 2730), ('methylInheritance', 62, 1252), ('methylKit', 630, 257), ('MethylMix', 94, 876), ('methylMnM', 72, 1091), ('methylPipe', 119, 707), ('methylscaper', 46, 1918), ('MethylSeekR', 136, 624), ('methylSig', 68, 1135), ('methylumi', 1443, 164), ('methyvim', 7, 2537), ('MetID', 50, 1726), ('MetNet', 49, 1788), ('mfa', 79, 1011), ('Mfuzz', 1140, 196), ('MGFM', 57, 1412), ('MGFR', 60, 1300), ('MGnifyR', 1, 2719), ('mgsa', 106, 790), ('mia', 1434, 165), ('miaSim', 95, 875), ('miaViz', 230, 442), ('MiChip', 50, 1712), ('microbiome', 1619, 154), ('microbiomeDASim', 53, 1590), ('microbiomeExplorer', 74, 1065), ('microbiomeMarker', 365, 348), ('MicrobiomeProfiler', 100, 841), ('MicrobiotaProcess', 490, 291), ('microRNA', 156, 567), ('microSTASIS', 42, 2051), ('MICSQTL', 26, 2235), ('midasHLA', 55, 1489), ('MIGSA', 14, 2380), ('miloR', 257, 413), ('mimager', 59, 1337), ('MIMOSA', 33, 2184), ('mina', 42, 2047), ('MineICA', 70, 1113), ('minet', 761, 235), ('minfi', 2319, 130), ('MinimumDistance', 64, 1220), ('MiPP', 51, 1671), ('miQC', 104, 803), ('MIRA', 120, 704), ('MiRaGE', 57, 1445), ('miRBaseConverter', 124, 681), ('miRcomp', 48, 1798), ('mirIntegrator', 62, 1263), ('MIRit', 2, 2681), ('miRLAB', 60, 1328), ('miRmine', 33, 2187), ('miRNAmeConverter', 53, 1573), ('miRNApath', 61, 1274), ('miRNAtap', 143, 606), ('miRSM', 35, 2176), ('miRsponge', 5, 2599), ('miRspongeR', 47, 1886), ('Mirsynergy', 10, 2465), ('mirTarRnaSeq', 58, 1381), ('missMethyl', 973, 213), ('missRows', 48, 1805), ('mistyR', 87, 931), ('mitch', 61, 1272), ('mitoClone2', 53, 1600), ('mitoODE', 11, 2455), ('mixOmics', 2906, 119), ('MLInterfaces', 380, 341), ('mlm4omics', 2, 2663), ('MLP', 121, 696), ('MLSeq', 154, 572), ('MMAPPR2', 22, 2278), ('MMDiff', 7, 2533), ('MMDiff2', 48, 1836), ('mmgmos', 1, 2752), ('mmnet', 8, 2519), ('MmPalateMiRNA', 13, 2392), ('MMUPHin', 103, 805), ('mnem', 145, 601), ('moanin', 121, 698), ('mobileRNA', 3, 2641), ('MobilityTransformR', 38, 2147), ('MODA', 51, 1681), ('ModCon', 38, 2138), ('Modstrings', 208, 472), ('MOFA', 6, 2572), ('MOFA2', 433, 315), ('MOGAMUN', 47, 1855), ('mogsa', 159, 558), ('MoleculeExperiment', 57, 1445), ('MOMA', 57, 1431), ('monaLisa', 119, 710), ('monocle', 3041, 113), ('Moonlight2R', 33, 2192), ('MoonlightR', 67, 1147), ('MoPS', 6, 2558), ('mosaics', 133, 640), ('mosbi', 46, 1918), ('MOSim', 45, 1932), ('Motif2Site', 42, 2055), ('motifbreakR', 204, 478), ('motifcounter', 55, 1493), ('MotifDb', 646, 252), ('motifmatchr', 1309, 172), ('motifRG', 15, 2351), ('motifStack', 719, 239), ('motifTestR', 1, 2712), ('MotIV', 30, 2217), ('MouseFM', 96, 866), ('MPFE', 41, 2075), ('mpra', 53, 1590), ('MPRAnalyze', 62, 1235), ('MQmetrics', 44, 1993), ('mQTL.NMR', 5, 2600), ('msa', 1519, 161), ('MSA2dist', 123, 685), ('MsBackendMassbank', 72, 1091), ('MsBackendMgf', 466, 304), ('MsBackendMsp', 207, 473), ('MsBackendRawFileReader', 57, 1422), ('MsBackendSql', 58, 1385), ('MsCoreUtils', 3487, 100), ('MsDataHub', 57, 1410), ('MSEADbi', 3, 2647), ('MsExperiment', 803, 234), ('MsFeatures', 1602, 159), ('msgbsR', 68, 1140), ('MSGFgui', 9, 2494), ('MSGFplus', 13, 2406), ('msImpute', 83, 956), ('mslp', 37, 2162), ('msmsEDA', 276, 397), ('msmsTests', 259, 410), ('MSnbase', 3174, 110), ('MSnID', 239, 433), ('MSPrep', 103, 811), ('msPurity', 77, 1032), ('msqrob2', 111, 751), ('MsQuality', 60, 1315), ('MSstats', 503, 288), ('MSstatsBig', 23, 2264), ('MSstatsConvert', 478, 298), ('MSstatsLiP', 69, 1127), ('MSstatsLOBD', 43, 2032), ('MSstatsPTM', 190, 495), ('MSstatsQC', 69, 1120), ('MSstatsQCgui', 40, 2102), ('MSstatsSampleSize', 24, 2258), ('MSstatsShiny', 95, 871), ('MSstatsTMT', 270, 404), ('MSstatsTMTPTM', 3, 2641), ('MTseeker', 2, 2675), ('MuData', 53, 1585), ('Mulcom', 72, 1079), ('MultiAssayExperiment', 4903, 85), ('MultiBaC', 64, 1211), ('multiClust', 80, 985), ('multicrispr', 57, 1416), ('MultiDataSet', 1193, 186), ('multiGSEA', 108, 774), ('multiHiCcompare', 177, 513), ('MultiMed', 50, 1731), ('multiMiR', 222, 451), ('MultimodalExperiment', 38, 2146), ('multiOmicsViz', 43, 2036), ('MultiRNAflow', 25, 2246), ('multiscan', 51, 1704), ('multiSight', 76, 1040), ('multiWGCNA', 40, 2110), ('multtest', 12178, 52), ('mumosa', 65, 1194), ('MungeSumstats', 966, 217), ('muscat', 400, 331), ('muscle', 309, 378), ('musicatk', 76, 1039), ('MutationalPatterns', 332, 364), ('MVCClass', 89, 912), ('mvGST', 3, 2632), ('MWASTools', 147, 593), ('mygene', 344, 356), ('myvariant', 79, 996), ('mzID', 3024, 115), ('mzR', 3322, 106)], 'N': [('NADfinder', 53, 1577), ('NanoMethViz', 76, 1044), ('NanoStringDiff', 90, 898), ('NanoStringNCTools', 385, 338), ('NanoStringQCPro', 49, 1773), ('nanotatoR', 103, 807), ('NanoTube', 80, 990), ('NarrowPeaks', 14, 2380), ('NBAMSeq', 81, 975), ('NBSplice', 10, 2479), ('ncdfFlow', 1144, 195), ('ncGTW', 41, 2095), ('NCIgraph', 113, 743), ('ncRNAtools', 43, 2017), ('ndexr', 67, 1153), ('neaGUI', 6, 2558), ('nearBynding', 45, 1927), ('Nebulosa', 966, 216), ('NeighborNet', 25, 2245), ('nem', 17, 2318), ('nempi', 54, 1558), ('NetActivity', 45, 1970), ('netbenchmark', 7, 2540), ('netbiov', 31, 2211), ('netboost', 39, 2136), ('netboxr', 9, 2489), ('netDx', 48, 1794), ('nethet', 48, 1810), ('netOmics', 42, 2041), ('NetPathMiner', 59, 1353), ('netprioR', 45, 1955), ('netReg', 7, 2540), ('netresponse', 64, 1204), ('NetSAM', 59, 1358), ('netSmooth', 64, 1216), ('networkBMA', 15, 2351), ('netZooR', 57, 1442), ('NeuCA', 33, 2196), ('NewWave', 110, 763), ('NGScopy', 6, 2577), ('ngsReports', 72, 1090), ('nipalsMCIA', 24, 2251), ('nnNorm', 55, 1502), ('nnSVG', 86, 933), ('NOISeq', 571, 274), ('nondetects', 69, 1131), ('NoRCE', 49, 1788), ('normalize450K', 46, 1923), ('NormalyzerDE', 144, 604), ('NormqPCR', 175, 520), ('normr', 133, 640), ('NPARC', 51, 1692), ('npGSEA', 61, 1272), ('NTW', 49, 1780), ('nucleoSim', 54, 1548), ('nucleR', 77, 1037), ('nuCpos', 46, 1899), ('nudge', 10, 2487), ('nullranges', 155, 571), ('NuPoP', 67, 1145), ('NxtIRFcore', 20, 2289)], 'O': [('occugene', 46, 1923), ('OCplus', 80, 990), ('octad', 51, 1698), ('ODER', 19, 2297), ('odseq', 66, 1169), ('OGRE', 55, 1493), ('OGSA', 6, 2558), ('oligo', 1616, 155), ('oligoClasses', 1693, 150), ('OLIN', 88, 920), ('OLINgui', 52, 1619), ('omada', 35, 2174), ('OmaDB', 193, 488), ('omicade4', 136, 624), ('OmicCircos', 185, 497), ('omicplotR', 61, 1288), ('omicRexposome', 54, 1553), ('OmicsLonDA', 24, 2251), ('OmicsMarkeR', 7, 2549), ('OMICsPCA', 60, 1303), ('omicsPrint', 51, 1677), ('omicsViewer', 49, 1753), ('Omixer', 48, 1810), ('OmnipathR', 511, 284), ('ompBAM', 99, 846), ('Onassis', 8, 2514), ('oncomix', 45, 1942), ('oncoscanR', 40, 2104), ('OncoScore', 52, 1623), ('OncoSimulR', 59, 1337), ('oneChannelGUI', 12, 2434), ('oneSENSE', 19, 2300), ('onlineFDR', 43, 2023), ('ontoCAT', 10, 2467), ('ontoProc', 219, 455), ('ontoTools', 2, 2702), ('openCyto', 675, 246), ('openPrimeR', 124, 679), ('openPrimeRui', 60, 1311), ('OpenStats', 43, 2027), ('OperaMate', 3, 2644), ('oposSOM', 72, 1081), ('oppar', 58, 1377), ('oppti', 42, 2062), ('optimalFlow', 54, 1548), ('OPWeight', 48, 1836), ('OrderedList', 79, 1002), ('ORFhunteR', 48, 1836), ('ORFik', 201, 485), ('Organism.dplyr', 420, 321), ('OrganismDbi', 3248, 108), ('orthogene', 318, 371), ('orthos', 24, 2256), ('OSAT', 61, 1296), ('Oscope', 85, 943), ('OTUbase', 59, 1349), ('OutlierD', 13, 2402), ('OUTRIDER', 201, 484), ('OutSplice', 43, 2012), ('OVESEG', 45, 1964)], 'P': [('PAA', 65, 1199), ('packFinder', 48, 1830), ('padma', 46, 1890), ('PADOG', 237, 435), ('pageRank', 54, 1541), ('PAIRADISE', 82, 968), ('paircompviz', 56, 1449), ('pairedGSEA', 38, 2152), ('pairkat', 38, 2149), ('pairseqsim', 1, 2748), ('pamr', 5, 2600), ('pandaR', 125, 675), ('panelcn.mops', 82, 970), ('PAnnBuilder', 12, 2431), ('PanomiR', 60, 1311), ('panp', 53, 1612), ('PANR', 54, 1548), ('PanViz', 35, 2179), ('PanVizGenerator', 9, 2496), ('PAPi', 16, 2325), ('pareg', 42, 2041), ('parglms', 47, 1872), ('parody', 96, 870), ('partCNV', 24, 2259), ('PAST', 44, 1976), ('Path2PPI', 56, 1474), ('pathifier', 123, 686), ('pathlinkR', 4, 2606), ('PathNet', 62, 1235), ('PathoStat', 66, 1159), ('pathprint', 6, 2556), ('pathRender', 57, 1445), ('pathVar', 25, 2244), ('pathview', 4336, 91), ('pathwayPCA', 71, 1094), ('PathwaySplice', 5, 2588), ('PatientGeneSets', 1, 2712), ('paxtoolsr', 84, 951), ('Pbase', 9, 2496), ('pbcmc', 4, 2611), ('pcaExplorer', 475, 300), ('pcaGoPromoter', 13, 2397), ('pcaMethods', 5081, 84), ('PCAN', 55, 1511), ('PCAtools', 1158, 193), ('pcot2', 13, 2390), ('PCpheno', 13, 2402), ('pcxn', 47, 1872), ('PDATK', 80, 984), ('pdInfoBuilder', 110, 767), ('pdmclass', 10, 2474), ('PeacoQC', 208, 470), ('peakPantheR', 56, 1474), ('PECA', 60, 1317), ('peco', 45, 1970), ('Pedixplorer', 2, 2675), ('pengls', 39, 2130), ('PepsNMR', 114, 731), ('pepStat', 48, 1816), ('pepXMLTab', 57, 1437), ('PERFect', 41, 2085), ('periodicDNA', 44, 1976), ('perturbatr', 6, 2572), ('pfamAnalyzeR', 224, 447), ('PFP', 19, 2299), ('PGA', 9, 2489), ('pgca', 44, 1976), ('PGSEA', 49, 1786), ('pgUtils', 2, 2656), ('pgxRpi', 4, 2614), ('phantasus', 146, 599), ('phantasusLite', 26, 2238), ('PharmacoGx', 272, 401), ('phemd', 40, 2112), ('phenoDist', 10, 2465), ('PhenoGeneRanker', 38, 2152), ('phenomis', 52, 1619), ('phenopath', 86, 935), ('phenoTest', 133, 639), ('PhenStat', 57, 1431), ('philr', 182, 503), ('PhIPData', 94, 876), ('phosphonormalizer', 46, 1908), ('PhosR', 102, 818), ('PhyloProfile', 72, 1087), ('phyloseq', 5345, 80), ('Pi', 75, 1050), ('piano', 472, 301), ('pickgene', 48, 1794), ('PICS', 115, 728), ('Pigengene', 118, 720), ('PING', 69, 1127), ('pint', 10, 2480), ('pipeComp', 48, 1816), ('pipeFrame', 167, 535), ('PIPETS', 2, 2656), ('pkgDepTools', 22, 2273), ('planet', 176, 517), ('planttfhunter', 38, 2147), ('plasmut', 19, 2304), ('plateCore', 13, 2410), ('plethy', 23, 2268), ('plgem', 109, 770), ('plier', 111, 750), ('PloGO2', 69, 1118), ('plotgardener', 337, 362), ('plotGrouper', 45, 1934), ('PLPE', 53, 1600), ('plrs', 12, 2431), ('PLSDAbatch', 3, 2630), ('plw', 13, 2402), ('plyinteractions', 29, 2219), ('plyranges', 1232, 182), ('pmm', 42, 2046), ('pmp', 114, 732), ('PoDCall', 43, 2023), ('podkat', 51, 1681), ('pogos', 62, 1249), ('polyester', 120, 701), ('Polyfit', 7, 2528), ('POMA', 75, 1055), ('POST', 7, 2551), ('PoTRA', 7, 2551), ('PowerExplorer', 6, 2576), ('powerTCR', 384, 339), ('POWSC', 55, 1506), ('ppcseq', 45, 1927), ('PPInfer', 120, 705), ('ppiStats', 15, 2347), ('pqsfinder', 74, 1069), ('prada', 19, 2296), ('pram', 43, 2023), ('prebs', 70, 1108), ('preciseTAD', 53, 1577), ('PrecisionTrialDrawer', 6, 2564), ('PREDA', 83, 960), ('predictionet', 13, 2406), ('preprocessCore', 14050, 47), ('primirTSS', 59, 1347), ('PrInCE', 53, 1570), ('Prize', 7, 2550), ('proActiv', 59, 1349), ('proBAMr', 51, 1692), ('proBatch', 35, 2177), ('PROcess', 90, 901), ('procoil', 58, 1404), ('ProCoNA', 11, 2458), ('proDA', 216, 457), ('proFIA', 14, 2383), ('profileplyr', 223, 449), ('profileScoreDist', 45, 1951), ('progeny', 401, 330), ('projectR', 102, 813), ('pRoloc', 258, 412), ('pRolocGUI', 84, 952), ('PROMISE', 103, 808), ('PROPER', 81, 974), ('PROPS', 49, 1764), ('Prostar', 71, 1095), ('prot2D', 11, 2449), ('proteasy', 30, 2214), ('proteinProfiles', 48, 1826), ('ProteoDisco', 47, 1848), ('ProteomicsAnnotationHubData', 9, 2498), ('ProteoMM', 73, 1074), ('proteoQC', 8, 2517), ('protGear', 50, 1716), ('ProtGenerics', 11520, 55), ('PSEA', 47, 1864), ('psichomics', 72, 1079), ('PSICQUIC', 22, 2276), ('PSMatch', 206, 474), ('psygenet2r', 66, 1159), ('ptairMS', 45, 1942), ('PubScore', 4, 2608), ('pulsedSilac', 5, 2580), ('puma', 98, 849), ('PureCN', 158, 563), ('pvac', 50, 1742), ('pvca', 244, 430), ('Pviz', 78, 1022), ('PWMEnrich', 156, 565), ('pwOmics', 102, 816), ('pwrEWAS', 33, 2189)], 'Q': [('qckitfastq', 55, 1521), ('qcmetrics', 89, 908), ('QDNAseq', 388, 337), ('QFeatures', 1286, 175), ('qmtools', 46, 1892), ('qpcrNorm', 58, 1375), ('qpgraph', 174, 523), ('qPLEXanalyzer', 67, 1152), ('qrqc', 26, 2240), ('qsea', 62, 1254), ('qsmooth', 125, 672), ('QSutils', 55, 1524), ('qsvaR', 108, 772), ('QTLExperiment', 21, 2285), ('Qtlizer', 46, 1896), ('QUALIFIER', 14, 2367), ('quantiseqr', 445, 310), ('quantro', 344, 355), ('quantsmooth', 630, 256), ('QuartPAC', 58, 1377), ('QuasR', 358, 351), ('QuaternaryProd', 71, 1103), ('QUBIC', 134, 634), ('qusage', 389, 336), ('qvalue', 16677, 40)], 'R': [('R3CPET', 57, 1422), ('r3Cseq', 87, 927), ('R453Plus1Toolbox', 62, 1241), ('R4RNA', 612, 259), ('RadioGx', 61, 1292), ('raer', 22, 2270), ('RaggedExperiment', 934, 221), ('RAIDS', 25, 2247), ('rain', 88, 921), ('rama', 17, 2321), ('RamiGO', 10, 2474), ('ramr', 42, 2062), ('ramwas', 127, 665), ('RandomWalkRestartMH', 114, 737), ('randPack', 54, 1557), ('randRotation', 39, 2122), ('RankProd', 290, 385), ('RAREsim', 39, 2134), ('RareVariantVis', 59, 1358), ('Rariant', 14, 2380), ('Rarr', 105, 794), ('rawDiag', 0, 2754), ('rawrr', 203, 483), ('RbcBook1', 75, 1060), ('Rbec', 51, 1671), ('RBGL', 9461, 64), ('RBioFormats', 102, 813), ('RBioinf', 61, 1267), ('rBiopaxParser', 167, 533), ('RBM', 54, 1527), ('Rbowtie', 510, 285), ('Rbowtie2', 315, 372), ('rbsurv', 60, 1328), ('Rbwa', 98, 851), ('Rcade', 20, 2291), ('RCAS', 122, 692), ('RCASPAR', 47, 1867), ('rcellminer', 62, 1257), ('rCGH', 106, 786), ('Rchemcpp', 13, 2397), ('RchyOptimyx', 13, 2392), ('RcisTarget', 845, 230), ('RCM', 55, 1502), ('Rcollectl', 28, 2226), ('Rcpi', 118, 718), ('RCSL', 31, 2208), ('Rcwl', 101, 829), ('RcwlPipelines', 92, 889), ('RCX', 91, 892), ('RCy3', 939, 219), ('RCyjs', 70, 1111), ('RCytoscape', 12, 2447), ('RDAVIDWebService', 33, 2191), ('Rdbi', 2, 2661), ('RdbiPgSQL', 1, 2706), ('rDGIdb', 79, 1008), ('Rdisop', 460, 306), ('RDRToolbox', 119, 708), ('ReactomeContentService4R', 97, 864), ('ReactomeGraph4R', 40, 2108), ('ReactomeGSA', 223, 449), ('ReactomePA', 2330, 129), ('readat', 7, 2534), ('ReadqPCR', 203, 479), ('reb', 12, 2443), ('REBET', 42, 2067), ('rebook', 179, 509), ('receptLoss', 38, 2142), ('reconsi', 48, 1836), ('recount', 426, 318), ('recount3', 309, 377), ('recountmethylation', 58, 1397), ('recoup', 51, 1661), ('RedeR', 327, 368), ('RedisParam', 40, 2114), ('REDseq', 82, 966), ('RefNet', 12, 2438), ('RefPlus', 42, 2067), ('RegEnrich', 101, 830), ('regionalpcs', 26, 2234), ('RegionalST', 33, 2196), ('regioneR', 2056, 137), ('regioneReloaded', 45, 1955), ('regionReport', 118, 715), ('regsplice', 45, 1955), ('regutools', 61, 1298), ('REMP', 66, 1183), ('Repitools', 327, 366), ('ReportingTools', 720, 238), ('reposTools', 0, 2757), ('RepViz', 103, 808), ('ReQON', 50, 1726), ('ResidualMatrix', 3407, 103), ('RESOLVE', 53, 1600), ('Resourcerer', 4, 2604), ('restfulSE', 118, 713), ('retrofit', 39, 2133), ('ReUseData', 39, 2128), ('rexposome', 100, 840), ('rfaRm', 39, 2118), ('Rfastp', 134, 637), ('rflowcyt', 2, 2681), ('rfPred', 59, 1366), ('rGADEM', 277, 396), ('RGalaxy', 15, 2338), ('rGenomeTracks', 43, 2020), ('Rgin', 6, 2556), ('RGMQL', 49, 1788), ('RgnTX', 42, 2065), ('rgoslin', 59, 1337), ('RGraph2js', 50, 1726), ('Rgraphviz', 9864, 61), ('rGREAT', 665, 248), ('RGSEA', 64, 1207), ('rgsepd', 52, 1623), ('rhdf5', 19486, 31), ('rhdf5client', 143, 605), ('rhdf5filters', 18754, 34), ('Rhdf5lib', 22922, 23), ('Rhisat2', 219, 454), ('Rhtslib', 23840, 21), ('rHVDM', 11, 2451), ('RiboCrypt', 47, 1886), ('RiboDiPA', 48, 1826), ('RiboProfiling', 81, 973), ('ribor', 45, 1964), ('riboSeqR', 40, 2112), ('ribosomeProfilingQC', 75, 1053), ('rifi', 37, 2163), ('rifiComparative', 33, 2192), ('RImmPort', 44, 1976), ('Ringo', 374, 344), ('Rintact', 1, 2734), ('RIPAT', 31, 2209), ('RIPSeeker', 23, 2265), ('Risa', 62, 1254), ('RITAN', 60, 1328), ('RIVER', 46, 1892), ('RJMCMCNucleosomes', 51, 1692), ('RLassoCox', 47, 1853), ('RLMM', 51, 1681), ('RLSeq', 39, 2124), ('RMAGEML', 2, 2681), ('Rmagpie', 50, 1712), ('RMAPPER', 3, 2630), ('RMassBank', 97, 858), ('rMAT', 10, 2467), ('rmelting', 63, 1224), ('RmiR', 13, 2390), ('Rmmquant', 45, 1964), ('rmspc', 51, 1661), ('RNAAgeCalc', 70, 1107), ('RNAdecay', 33, 2189), ('rnaEditr', 46, 1904), ('RNAinteract', 80, 993), ('RNAither', 15, 2341), ('RNAmodR', 114, 733), ('RNAmodR.AlkAnilineSeq', 55, 1493), ('RNAmodR.ML', 48, 1816), ('RNAmodR.RiboMethSeq', 51, 1671), ('RNAprobR', 7, 2551), ('RNAsense', 41, 2099), ('rnaseqcomp', 57, 1420), ('RNAseqCovarImpute', 20, 2293), ('rnaSeqMap', 15, 2351), ('RNASeqPower', 141, 612), ('RNASeqR', 8, 2524), ('RnaSeqSampleSize', 94, 879), ('RnBeads', 284, 390), ('Rnits', 48, 1821), ('roar', 57, 1442), ('roastgsa', 20, 2291), ('ROC', 1030, 207), ('ROCpAI', 41, 2085), ('RolDE', 45, 1945), ('Roleswitch', 12, 2429), ('Rolexa', 8, 2524), ('rols', 419, 323), ('ROntoTools', 211, 463), ('ropls', 1185, 187), ('ROSeq', 42, 2051), ('ROTS', 203, 482), ('RPA', 98, 848), ('rprimer', 69, 1123), ('RProtoBufLib', 2686, 124), ('RpsiXML', 18, 2305), ('rpx', 246, 427), ('Rqc', 264, 406), ('rqt', 58, 1381), ('rqubic', 79, 1011), ('rRDP', 62, 1257), ('Rredland', 1, 2726), ('RRHO', 97, 863), ('rrvgo', 441, 313), ('Rsamtools', 22785, 24), ('rsbml', 149, 586), ('rScudo', 48, 1798), ('rsemmed', 40, 2104), ('RSeqAn', 79, 1000), ('rSFFreader', 9, 2499), ('RSNPper', 1, 2712), ('Rsubread', 2262, 131), ('RSVSim', 63, 1228), ('rSWeeP', 43, 2031), ('rTANDEM', 17, 2324), ('RTCA', 56, 1474), ('RTCGA', 552, 279), ('RTCGAToolbox', 588, 266), ('RTN', 167, 534), ('RTNduals', 83, 962), ('RTNsurvival', 64, 1220), ('RTools4TB', 1, 2706), ('RTopper', 54, 1558), ('Rtpca', 42, 2047), ('rtracklayer', 21000, 27), ('Rtreemix', 54, 1548), ('rTRM', 138, 619), ('rTRMui', 60, 1333), ('runibic', 75, 1058), ('Ruuid', 4, 2618), ('RUVcorr', 55, 1493), ('RUVnormalize', 63, 1223), ('RUVSeq', 935, 220), ('Rvisdiff', 20, 2290), ('RVS', 47, 1881), ('RWebServices', 3, 2632), ('rWikiPathways', 382, 340)], 'S': [('S4Arrays', 34061, 17), ('S4Vectors', 54089, 4), ('safe', 603, 264), ('SAGElyzer', 1, 2706), ('sagenhaft', 50, 1722), ('SAGx', 16, 2328), ('SAIGEgds', 58, 1371), ('samExploreR', 7, 2545), ('sampleClassifier', 56, 1481), ('SamSPECTRAL', 147, 594), ('sangeranalyseR', 175, 522), ('sangerseqR', 884, 227), ('SANTA', 59, 1358), ('sapFinder', 13, 2419), ('saps', 2, 2687), ('SARC', 24, 2251), ('sarks', 42, 2067), ('saseR', 4, 2618), ('satuRn', 253, 419), ('savR', 31, 2204), ('SBGNview', 160, 555), ('sbgr', 1, 2748), ('SBMLR', 64, 1219), ('SC3', 407, 326), ('Scale4C', 46, 1904), ('ScaledMatrix', 11740, 54), ('scAlign', 16, 2331), ('SCAN.UPC', 150, 581), ('scanMiR', 73, 1078), ('scanMiRApp', 54, 1535), ('scAnnotatR', 124, 678), ('SCANVIS', 58, 1371), ('SCArray', 75, 1061), ('SCArray.sat', 44, 1988), ('SCATE', 84, 950), ('scater', 6673, 73), ('scatterHatch', 39, 2136), ('scBFA', 52, 1643), ('SCBN', 75, 1056), ('scBubbletree', 45, 1932), ('scCB2', 50, 1731), ('scClassifR', 2, 2654), ('scClassify', 83, 958), ('sccomp', 90, 902), ('scDataviz', 76, 1046), ('scDblFinder', 1342, 170), ('scDD', 137, 620), ('scDDboost', 41, 2095), ('scde', 338, 361), ('scDesign3', 31, 2206), ('scds', 489, 293), ('SCFA', 42, 2038), ('scFeatureFilter', 46, 1914), ('scFeatures', 61, 1274), ('scfind', 5, 2584), ('scGPS', 52, 1623), ('schex', 227, 445), ('scHOT', 64, 1215), ('scider', 26, 2243), ('scifer', 48, 1805), ('ScISI', 19, 2297), ('scMAGeCK', 7, 2528), ('scmap', 260, 409), ('scMerge', 488, 294), ('scMET', 46, 1899), ('scmeth', 67, 1157), ('scMitoMut', 2, 2675), ('SCnorm', 92, 890), ('scone', 107, 777), ('Sconify', 50, 1744), ('SCOPE', 53, 1585), ('scoreInvHap', 52, 1634), ('scp', 124, 677), ('scPCA', 85, 947), ('scPipe', 130, 653), ('scran', 4646, 88), ('scReClassify', 42, 2060), ('scRecover', 55, 1511), ('screenCounter', 36, 2170), ('ScreenR', 37, 2156), ('scRepertoire', 364, 350), ('scRNAseqApp', 59, 1349), ('scruff', 66, 1162), ('scry', 227, 444), ('scShapes', 41, 2072), ('scsR', 13, 2416), ('scTensor', 122, 694), ('scTGIF', 135, 632), ('scTHI', 41, 2077), ('scTreeViz', 48, 1798), ('scuttle', 9721, 63), ('scviR', 43, 2028), ('SDAMS', 52, 1642), ('sechm', 148, 590), ('segmenter', 52, 1628), ('segmentSeq', 55, 1511), ('selectKSigs', 44, 1984), ('SELEX', 50, 1731), ('SemDist', 47, 1845), ('semisup', 43, 2012), ('SemSim', 1, 2719), ('SEPA', 5, 2595), ('SEPIRA', 28, 2225), ('seq.hotSPOT', 34, 2183), ('seq2pathway', 112, 748), ('seqArchR', 81, 983), ('seqArchRplus', 45, 1945), ('SeqArray', 898, 225), ('seqbias', 80, 985), ('seqCAT', 52, 1647), ('seqCNA', 55, 1487), ('seqcombo', 50, 1737), ('SeqGate', 39, 2120), ('SeqGSEA', 132, 643), ('seqLogo', 3469, 101), ('seqPattern', 646, 251), ('seqplots', 10, 2471), ('seqsetvis', 60, 1325), ('SeqSQC', 87, 925), ('seqTools', 119, 708), ('SeqVarTools', 443, 312), ('sesame', 656, 249), ('SEtools', 126, 666), ('sevenbridges', 61, 1279), ('sevenC', 47, 1855), ('SGCP', 105, 797), ('SGSeq', 307, 379), ('SharedObject', 142, 607), ('shiny.gosling', 4, 2618), ('shinyepico', 62, 1241), ('shinyMethyl', 102, 813), ('shinyTANDEM', 12, 2442), ('ShortRead', 6226, 75), ('SIAMCAT', 110, 765), ('SICtools', 44, 1988), ('sigaR', 13, 2412), ('SigCheck', 53, 1577), ('sigFeature', 203, 480), ('SigFuge', 54, 1541), ('siggenes', 3219, 109), ('sights', 51, 1681), ('signatureSearch', 210, 464), ('signeR', 71, 1101), ('signet', 6, 2577), ('signifinder', 58, 1397), ('sigPathway', 30, 2215), ('SigsPack', 47, 1855), ('sigsquared', 47, 1872), ('SIM', 54, 1568), ('SIMAT', 51, 1658), ('SimBindProfiles', 58, 1390), ('SimBu', 58, 1367), ('SIMD', 46, 1896), ('SimFFPE', 46, 1916), ('similaRpeak', 56, 1459), ('SIMLR', 247, 426), ('simona', 39, 2122), ('simPIC', 1, 2712), ('simpleaffy', 101, 835), ('simpleSeg', 68, 1143), ('simplifyEnrichment', 711, 243), ('simulatorAPMS', 2, 2697), ('simulatorZ', 8, 2515), ('sincell', 56, 1481), ('single', 45, 1961), ('SingleCellExperiment', 14491, 46), ('SingleCellSignalR', 248, 422), ('singleCellTK', 237, 437), ('SingleMoleculeFootprinting', 48, 1798), ('SingleR', 3810, 97), ('singscore', 1247, 180), ('SiPSiC', 41, 2082), ('SISPA', 32, 2201), ('sitadela', 44, 1987), ('sitePath', 52, 1647), ('sizepower', 58, 1375), ('SJava', 4, 2616), ('sketchR', 2, 2663), ('skewr', 39, 2128), ('slalom', 102, 820), ('SLGI', 15, 2362), ('slingshot', 1429, 166), ('slinky', 6, 2577), ('SLqPCR', 58, 1397), ('SMAD', 44, 1974), ('SMAP', 46, 1890), ('smartid', 1, 2734), ('SMITE', 61, 1285), ('smoothclust', 1, 2712), ('SNAGEE', 53, 1605), ('snapCGH', 108, 772), ('snapcount', 53, 1577), ('snifter', 132, 644), ('snm', 165, 542), ('SNPchip', 19, 2295), ('SNPediaR', 47, 1881), ('SNPhood', 54, 1535), ('snpMatrix', 9, 2505), ('SNPRelate', 1622, 153), ('snpStats', 2258, 132), ('soGGi', 323, 370), ('sojourner', 11, 2458), ('SomatiCA', 9, 2503), ('SomaticSignatures', 183, 501), ('SOMNiBUS', 51, 1687), ('SpaceMarkers', 1, 2734), ('SpacePAC', 93, 885), ('spade', 10, 2478), ('Spaniel', 72, 1082), ('sparrow', 119, 710), ('SparseArray', 20137, 28), ('sparseDOSSA', 36, 2164), ('sparseMatrixStats', 15195, 44), ('sparsenetgls', 44, 2000), ('SparseSignatures', 53, 1605), ('spaSim', 54, 1558), ('SpatialCPie', 71, 1096), ('spatialDE', 99, 847), ('SpatialDecon', 174, 525), ('SpatialExperiment', 1528, 160), ('SpatialFeatureExperiment', 149, 583), ('spatialHeatmap', 148, 591), ('SpatialOmicsOverlay', 59, 1358), ('spatzie', 45, 1942), ('speckle', 138, 618), ('specL', 56, 1465), ('SpeCond', 69, 1127), ('Spectra', 1416, 168), ('SpectralTAD', 85, 944), ('SPEM', 68, 1132), ('SPIA', 635, 255), ('SPIAT', 101, 827), ('spicyR', 179, 508), ('SpidermiR', 88, 914), ('spikeLI', 43, 2007), ('spiky', 42, 2049), ('spillR', 4, 2623), ('spkTools', 49, 1764), ('splatter', 424, 319), ('splicegear', 12, 2443), ('spliceR', 14, 2367), ('spliceSites', 13, 2387), ('SpliceWiz', 78, 1017), ('SplicingFactory', 39, 2132), ('SplicingGraphs', 88, 915), ('splineTCDiffExpr', 0, 2759), ('splineTimeR', 69, 1124), ('SPLINTER', 57, 1416), ('splots', 210, 467), ('SPONGE', 63, 1230), ('spoon', 1, 2706), ('SpotClean', 86, 937), ('SPOTlight', 209, 468), ('spotSegmentation', 11, 2455), ('spqn', 48, 1802), ('SPsimSeq', 130, 649), ('SQLDataFrame', 43, 2034), ('SQUADD', 47, 1848), ('sRACIPE', 58, 1377), ('SRAdb', 376, 343), ('sRAP', 14, 2383), ('SRGnet', 6, 2563), ('srnadiff', 46, 1896), ('sscore', 34, 2181), ('sscu', 47, 1864), ('sSeq', 169, 530), ('ssize', 85, 942), ('sSNAPPY', 104, 802), ('SSPA', 64, 1204), ('ssPATHS', 40, 2110), ('ssrch', 74, 1064), ('ssviz', 56, 1463), ('stageR', 182, 504), ('stam', 1, 2745), ('STAN', 15, 2341), ('standR', 110, 764), ('staRank', 61, 1274), ('StarBioTrek', 57, 1420), ('Starr', 13, 2416), ('STATegRa', 55, 1493), ('Statial', 60, 1303), ('statTarget', 92, 887), ('STdeconvolve', 118, 717), ('stepNorm', 51, 1681), ('stepwiseCM', 8, 2512), ('stJoincount', 54, 1527), ('strandCheckR', 49, 1784), ('Streamer', 56, 1453), ('STRINGdb', 1112, 200), ('STROMA4', 31, 2206), ('struct', 149, 584), ('Structstrings', 152, 578), ('structToolbox', 101, 828), ('StructuralVariantAnnotation', 208, 470), ('SubCellBarCode', 49, 1773), ('subSeq', 65, 1187), ('SUITOR', 38, 2139), ('SummarizedBenchmark', 53, 1577), ('SummarizedExperiment', 37488, 14), ('Summix', 36, 2166), ('supersigs', 44, 1984), ('supraHex', 429, 317), ('surfaltr', 46, 1918), ('SurfR', 2, 2697), ('survcomp', 1041, 205), ('survtype', 49, 1761), ('Sushi', 65, 1199), ('sva', 7018, 72), ('svaNUMT', 57, 1428), ('SVAPLSseq', 6, 2568), ('svaRetro', 57, 1431), ('SVM2CRM', 6, 2572), ('SVMDO', 100, 837), ('SWATH2stats', 59, 1337), ('SwathXtend', 61, 1282), ('swfdr', 54, 1532), ('SwimR', 10, 2484), ('switchBox', 120, 699), ('switchde', 53, 1612), ('synapsis', 40, 2114), ('synapter', 88, 915), ('synergyfinder', 181, 506), ('SynExtend', 50, 1748), ('synlet', 46, 1899), ('SynMut', 43, 2007), ('syntenet', 118, 719), ('systemPipeR', 1185, 188), ('systemPipeShiny', 56, 1469), ('systemPipeTools', 52, 1634)], 'T': [('tadar', 29, 2219), ('TADCompare', 81, 981), ('tanggle', 60, 1315), ('TAPseq', 52, 1628), ('target', 44, 2004), ('TargetDecoy', 40, 2100), ('TargetScore', 62, 1263), ('TargetSearch', 66, 1169), ('TarSeqQC', 14, 2374), ('TBSignatureProfiler', 61, 1271), ('TCC', 184, 498), ('TCGAbiolinks', 3466, 102), ('TCGAbiolinksGUI', 26, 2238), ('TCGAutils', 857, 229), ('TCseq', 149, 586), ('TDARACNE', 16, 2335), ('TDbasedUFE', 72, 1087), ('TDbasedUFEadv', 56, 1481), ('TEKRABber', 103, 811), ('TENxIO', 47, 1860), ('tenXplore', 56, 1459), ('TEQC', 66, 1182), ('ternarynet', 52, 1623), ('terraTCGAdata', 47, 1848), ('TFARM', 44, 1984), ('TFBSTools', 3123, 112), ('TFEA.ChIP', 62, 1241), ('TFHAZ', 49, 1788), ('TFutils', 76, 1040), ('tidybulk', 192, 489), ('tidyCoverage', 3, 2650), ('tidyomics', 2, 2687), ('tidySingleCellExperiment', 177, 513), ('tidySpatialExperiment', 3, 2643), ('tidySummarizedExperiment', 314, 373), ('tigre', 59, 1355), ('TileDBArray', 45, 1959), ('tilingArray', 141, 610), ('timecourse', 68, 1138), ('timeOmics', 66, 1164), ('timescape', 73, 1077), ('TimeSeriesExperiment', 9, 2495), ('TimiRGeN', 65, 1192), ('TIN', 48, 1802), ('TissueEnrich', 161, 552), ('TitanCNA', 77, 1030), ('tkWidgets', 1249, 178), ('tLOH', 43, 2020), ('TMixClust', 59, 1337), ('TNBC.CMS', 55, 1511), ('TnT', 45, 1961), ('TOAST', 376, 342), ('tofsims', 8, 2524), ('tomoda', 40, 2116), ('tomoseqr', 39, 2124), ('TOP', 41, 2072), ('ToPASeq', 7, 2551), ('topconfects', 166, 539), ('topdownr', 70, 1111), ('topGO', 3034, 114), ('ToxicoGx', 62, 1241), ('TPP', 88, 915), ('TPP2D', 49, 1778), ('tpSVG', 2, 2687), ('tracktables', 118, 720), ('trackViewer', 479, 297), ('tradeSeq', 489, 292), ('TrajectoryGeometry', 37, 2157), ('TrajectoryUtils', 1828, 143), ('transcriptogramer', 60, 1321), ('transcriptR', 66, 1179), ('transformGamPoi', 66, 1172), ('transite', 51, 1661), ('tRanslatome', 119, 710), ('transmogR', 2, 2663), ('transomics2cytoscape', 45, 1936), ('TransView', 53, 1609), ('TraRe', 5, 2580), ('traseR', 48, 1805), ('Travel', 3, 2626), ('traviz', 56, 1485), ('TreeAndLeaf', 123, 683), ('treeclimbR', 2, 2687), ('treeio', 19434, 32), ('treekoR', 53, 1595), ('TreeSummarizedExperiment', 1472, 163), ('TREG', 45, 1951), ('trena', 41, 2079), ('TReNA', 1, 2747), ('Trendy', 58, 1390), ('TRESS', 93, 882), ('tricycle', 204, 477), ('triform', 14, 2364), ('trigger', 58, 1397), ('trio', 95, 872), ('triplex', 53, 1605), ('tripr', 45, 1970), ('tRNA', 141, 611), ('tRNAdbImport', 111, 752), ('tRNAscanImport', 72, 1091), ('TRONCO', 67, 1147), ('TSAR', 17, 2314), ('TSCAN', 606, 260), ('tscR', 21, 2284), ('tspair', 15, 2351), ('TSRchitect', 10, 2476), ('TSSi', 12, 2423), ('ttgsea', 79, 999), ('TTMap', 44, 1997), ('TurboNorm', 58, 1390), ('TVTB', 59, 1343), ('tweeDEseq', 130, 651), ('twilight', 108, 775), ('twoddpcr', 50, 1737), ('txcutr', 41, 2082), ('txdbmaker', 53, 1577), ('tximeta', 1136, 197), ('tximport', 3330, 105), ('TxRegInfra', 6, 2568), ('TypeInfo', 48, 1842)], 'U': [('UCell', 1167, 192), ('UCSC.utils', 498, 289), ('Ularcirc', 60, 1313), ('UMI4Cats', 56, 1485), ('uncoverappLib', 53, 1573), ('UNDO', 71, 1103), ('unifiedWMWqPCR', 56, 1459), ('UniProt.ws', 420, 322), ('Uniquorn', 52, 1640), ('universalmotif', 479, 296), ('updateObject', 41, 2090), ('uSORT', 46, 1918)], 'V': [('VAExprs', 41, 2085), ('VanillaICE', 182, 502), ('VarCon', 42, 2055), ('variancePartition', 913, 222), ('VariantAnnotation', 9341, 65), ('VariantExperiment', 52, 1652), ('VariantFiltering', 88, 924), ('VariantTools', 164, 545), ('vasp', 3, 2650), ('VaSP', 54, 1553), ('vbmp', 69, 1115), ('VCFArray', 58, 1371), ('VDJdive', 44, 1975), ('Vega', 11, 2458), ('VegaMC', 54, 1558), ('velociraptor', 112, 746), ('veloviz', 45, 1951), ('VennDetail', 213, 460), ('VERSO', 44, 1988), ('vidger', 97, 861), ('viper', 712, 242), ('virtualArray', 5, 2589), ('ViSEAGO', 121, 697), ('VisiumIO', 3, 2647), ('vissE', 97, 858), ('Voyager', 102, 821), ('VplotR', 57, 1440), ('vsclust', 48, 1794), ('vsn', 5190, 82), ('vtpnet', 72, 1085), ('vulcan', 61, 1279)], 'W': [('waddR', 51, 1661), ('wateRmelon', 735, 237), ('wavClusteR', 58, 1405), ('waveTiling', 14, 2375), ('weaver', 58, 1371), ('webbioc', 62, 1241), ('weitrix', 48, 1821), ('widgetInvoke', 1, 2734), ('widgetTools', 1250, 177), ('wiggleplotr', 166, 537), ('wpm', 51, 1698), ('wppi', 44, 1997), ('Wrench', 1625, 152)], 'X': [('XBSeq', 9, 2507), ('XCIR', 4, 2616), ('xcms', 1748, 147), ('xcore', 46, 1899), ('XDE', 60, 1317), ('Xeva', 56, 1469), ('XINA', 43, 2036), ('xmapbridge', 50, 1731), ('xmapcore', 2, 2656), ('XNAString', 46, 1911), ('xps', 15, 2362), ('XVector', 46877, 7)], 'Y': [('y2hStat', 0, 2755), ('yamss', 60, 1306), ('YAPSA', 77, 1035), ('yaqcaffy', 15, 2355), ('yarn', 136, 629)], 'Z': [('zellkonverter', 1022, 208), ('zenith', 128, 658), ('zFPKM', 105, 791), ('zinbwave', 878, 228), ('zlibbioc', 49610, 6), ('ZygosityPredictor', 40, 2116)]})
session	<SecureCookieSession {}>
tab_page_prefix	'bioc'
top	[('BiocVersion', 57963, 1), ('GenomeInfoDb', 56036, 2), ('BiocGenerics', 54875, 3), ('S4Vectors', 54089, 4), ('IRanges', 50252, 5), ('zlibbioc', 49610, 6), ('XVector', 46877, 7), ('Biobase', 46691, 8), ('Biostrings', 44551, 9), ('DelayedArray', 42706, 10), ('BiocParallel', 41722, 11), ('GenomicRanges', 41289, 12), ('MatrixGenerics', 39135, 13), ('SummarizedExperiment', 37488, 14), ('AnnotationDbi', 36423, 15), ('KEGGREST', 34998, 16), ('S4Arrays', 34061, 17), ('limma', 31365, 18), ('BiocFileCache', 25564, 19), ('biomaRt', 23986, 20), ('Rhtslib', 23840, 21), ('GenomicAlignments', 23522, 22), ('Rhdf5lib', 22922, 23), ('Rsamtools', 22785, 24), ('edgeR', 22678, 25), ('DESeq2', 21212, 26), ('rtracklayer', 21000, 27), ('SparseArray', 20137, 28), ('ggtree', 19782, 29), ('GenomicFeatures', 19716, 30), ('rhdf5', 19486, 31), ('treeio', 19434, 32), ('BiocIO', 18960, 33), ('rhdf5filters', 18754, 34), ('graph', 18301, 35), ('annotate', 18110, 36), ('clusterProfiler', 17139, 37), ('enrichplot', 16953, 38), ('DOSE', 16749, 39), ('qvalue', 16677, 40), ('GOSemSim', 16394, 41), ('fgsea', 16241, 42), ('DelayedMatrixStats', 15979, 43), ('sparseMatrixStats', 15195, 44), ('beachmat', 15067, 45), ('SingleCellExperiment', 14491, 46), ('preprocessCore', 14050, 47), ('ComplexHeatmap', 13719, 48), ('BSgenome', 13333, 49), ('genefilter', 12982, 50), ('HDF5Array', 12420, 51), ('multtest', 12178, 52), ('BiocSingular', 11775, 53), ('ScaledMatrix', 11740, 54), ('ProtGenerics', 11520, 55), ('AnnotationHub', 10913, 56), ('impute', 10300, 57), ('interactiveDisplayBase', 10273, 58), ('AnnotationFilter', 10140, 59), ('BiocNeighbors', 10085, 60), ('Rgraphviz', 9864, 61), ('ensembldb', 9833, 62), ('scuttle', 9721, 63), ('RBGL', 9461, 64), ('VariantAnnotation', 9341, 65), ('GEOquery', 8968, 66), ('GSEABase', 8515, 67), ('affy', 8447, 68), ('affyio', 8309, 69), ('geneplotter', 7694, 70), ('ExperimentHub', 7350, 71), ('sva', 7018, 72), ('scater', 6673, 73), ('BiocStyle', 6289, 74), ('ShortRead', 6226, 75)]
top_count	75

Download stats for Bioconductor software packages

Top 75

All software packages

A

B

C

D

E

F

G

H

I

J

K

L

M

N

O

P

Q

R

S

T

U

V

W

X

Y

Z

Versions

Installed Packages

Resource Usage

HTTP Headers

Request Vars

View information

COOKIES Variables

SESSION Variables

GET Variables

POST Variables

Config

Templates

category.html

SQLAlchemy queries

Queries Unavailable

Install required libraries:

Log Messages

Route List

Profiler not active

flask.g content