$.platformDesign	platformDesign-class
$.platformDesign, FeatureSet-method	FeatureSet-class
allele	allele
allele,FeatureSet-method	FeatureSet-class
as.data.frame.platformDesign	as.data.frame.platformDesign
basecontent	basecontent
bg.correct.rma	bg.correct
boxplot,FeatureSet-method	FeatureSet-class
characterOrNULL-class	characterOrNULL-class
cleanPlatformName	cleanPlatformName
ExpressionFeatureSet-class	SubClasses
exprs, FeatureSet-method	FeatureSet-class
exprs,FeatureSet-method	FeatureSet-methods
featureIndex	featureIndex
featureIndex,FeatureSet-method	FeatureSet-class
featureInfo	featureInfo
FeatureSet-class	FeatureSet-class
geneNames,FeatureSet-method	FeatureSet-class
getPD	getPlatformDesign
getPlatformDesign	getPlatformDesign
getPlatformDesign,FeatureSet-method	FeatureSet-class
hist,FeatureSet-method	FeatureSet-class
i2xy	indexTools
image,FeatureSet-method	FeatureSet-class
indexFeatureSetName	indexFeatureSetName
indexFeatureSetName,FeatureSet-method	FeatureSet-class
initialize, FeatureSet-method	FeatureSet-methods
initialize,AnnotatedDataFrame-method	initialize-methods
initialize,ANY-method	initialize-methods
initialize,environment-method	initialize-methods
initialize,eSet-method	initialize-methods
initialize,ExpressionSet-method	initialize-methods
initialize,FeatureSet-method	initialize-methods
initialize,signature-method	initialize-methods
initialize,SnpSet-method	initialize-methods
initialize,traceable-method	initialize-methods
initialize-methods	initialize-methods
length,FeatureSet-method	FeatureSet-class
list.celfiles	fileManip
list.xysfiles	fileManip
manufacturer	accessors
manufacturer, FeatureSet-method	FeatureSet-class
manufacturer,FeatureSet-method	FeatureSet-methods
manufacturer<-	accessors
manufacturer<-, FeatureSet-method	FeatureSet-class
manufacturer<-,FeatureSet-method	FeatureSet-methods
mm	probeMatch-methods
mm,FeatureSet-method	FeatureSet-class
mm<-	probeMatch-methods
mm<-,FeatureSet-method	FeatureSet-class
mmindex	probeMatch-methods
mmindex,FeatureSet-method	FeatureSet-class
mmindex,platformDesign-method	platformDesign-class
mmSequence	methods-Sequences
names	names
names,platformDesign-method	platformDesign-class
ncol,FeatureSet-method	FeatureSet-class
normalize.FeatureSet.quantiles	normalize.quantiles
normalize.quantiles	normalize.quantiles
npixels	accessors
npixels,FeatureSet-method	FeatureSet-class
nProbes	nProbes
nProbes,platformDesign-method	platformDesign-class
nrow	dimensions
nrow,FeatureSet-method	FeatureSet-class
platform	accessors
platform,FeatureSet-method	FeatureSet-class
platform<-	accessors
platform<-, FeatureSet-method	FeatureSet-class
platform<-,FeatureSet-method	FeatureSet-methods
platformDesign-class	platformDesign-class
platformDesignName	platformDesignName
platformDesignName,FeatureSet-method	FeatureSet-class
plotDensity	plotDensity
plotDensity.FeatureSet	plotDensity
pm	probeMatch-methods
pm,FeatureSet-method	FeatureSet-class
pm<-	probeMatch-methods
pm<-,FeatureSet-method	FeatureSet-class
pmindex	probeMatch-methods
pmindex,FeatureSet-method	FeatureSet-class
pmindex,platformDesign-method	platformDesign-class
pmSequence	methods-Sequences
probeNames	probeNames
probeNames, FeatureSet-method	FeatureSet-methods
probeNames,FeatureSet,characterOrNULL-method	probeNames-methods
probeNames,FeatureSet-method	FeatureSet-class
probeNames,platformDesign,characterOrNULL-method	probeNames-methods
probeNames,platformDesign-method	platformDesign-class
probeNames-methods	probeNames-methods
read.affybatch	read.celfiles
read.celfiles	read.celfiles
read.xysfiles	parsers
readonexysfile	parsers
readxysHeader	parsers
rma	rma
sd,FeatureSet-method	FeatureSet-class
sequenceDesignMatrix	methods-Sequences
show,FeatureSet-method	FeatureSet-class
show,platformDesign-method	platformDesign-class
SnpFeatureSet-class	SubClasses
stuffForXYSandCELreaders	read.celfiles
TilingFeatureSet-class	SubClasses
type	accessors
xy2i	indexTools
