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ACE

This is the released version of ACE; for the devel version, see ACE.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing

DOI: 10.18129/B9.bioc.ACE

Bioconductor version: Release (3.23)

Uses segmented copy number data to estimate tumor cell percentage and produce copy number plots displaying absolute copy numbers.

Author: Jos B Poell

Maintainer: Jos B Poell <j.poell at amsterdamumc.nl>

Citation (from within R, enter citation("ACE")):

Jos B Poell. ACE: Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing. doi:10.18129/B9.bioc.ACE, R package version 1.30.0, https://bioconductor.org/packages/ACE.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ACE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ACE")

Details

Package Archives

Follow Installation instructions to use this package in your R session.