ASICS
This is the released version of ASICS; for the devel version, see ASICS.
Automatic Statistical Identification in Complex Spectra
Bioconductor version: Release (3.23)
With a set of pure metabolite reference spectra, ASICS quantifies concentration of metabolites in a complex spectrum. The identification of metabolites is performed by fitting a mixture model to the spectra of the library with a sparse penalty. The method and its statistical properties are described in Tardivel et al. (2017) <doi:10.1007/s11306-017-1244-5>.
Author: Gaëlle Lefort [aut, cre], Rémi Servien [aut], Patrick Tardivel [aut], Nathalie Vialaneix [aut]
Maintainer: Gaëlle Lefort <gaelle.lefort at inrae.fr>
citation("ASICS")):Gaëlle Lefort, Rémi Servien, Patrick Tardivel, Nathalie Vialaneix. ASICS: Automatic Statistical Identification in Complex Spectra. doi:10.18129/B9.bioc.ASICS, R package version 2.28.0, https://bioconductor.org/packages/ASICS.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ASICS")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ASICS")| ASICS | HTML | R Script |
| ASICS | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Cheminformatics, DataImport, Metabolomics, Software |
| Version | 2.28.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (8.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.5) |
| Imports | BiocParallel, ggplot2, glmnet, grDevices, gridExtra, methods, mvtnorm, PepsNMR, plyr, quadprog, ropls, stats, SummarizedExperiment, utils, Matrix, zoo |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle, testthat, ASICSdata |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | AlpsNMR |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ASICS_2.28.0.tar.gz |
| Windows Binary (x86_64) | ASICS_2.28.0.zip |
| macOS Binary (big-sur-x86_64) | ASICS_2.28.0.tgz |
| macOS Binary (sonoma-arm64) | ASICS_2.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ASICS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ASICS |
| Package Short Url | https://bioconductor.org/packages/ASICS/ |
| Package Downloads Report | Download Stats |