AWAggregatorData

This is the released version of AWAggregatorData; for the devel version, see AWAggregatorData.

All versions

Attribute-Weighted Aggregation Data

Bioconductor version: Release (3.23)

The AWAggregatorData package contains the data associated with the AWAggregator R package. It includes two pre-trained random forest models, one incorporating the average coefficient of variation as a feature, and the other one not including it. It also contains the PSMs in Benchmark Set 1~3 derived from the psm.tsv output files generated by FragPipe, which are used to train the random forest models.

Author: Jiahua Tan [aut, cre] ORCID: 0000-0001-5839-1049 , Gian L. Negri [aut] ORCID: 0000-0001-7722-8888 , Gregg B. Morin [aut] ORCID: 0000-0001-8949-4374 , David D. Y. Chen [aut] ORCID: 0000-0002-3669-6041

Maintainer: Jiahua Tan <jiahuatan at chem.ubc.ca>

Citation (from within R, enter citation("AWAggregatorData")):

Jiahua Tan, Gian L. Negri, Gregg B. Morin, David D. Y. Chen. AWAggregatorData: Attribute-Weighted Aggregation Data. doi:10.18129/B9.bioc.AWAggregatorData, R package version 1.2.0, https://bioconductor.org/packages/AWAggregatorData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AWAggregatorData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AWAggregatorData")

AWAggregatorData vignette	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, MassSpectrometryData, PackageTypeData, Proteome
Version	1.2.0
In Bioconductor since	BioC 3.22 (R-4.5) (1 year)
License	MIT + file LICENSE
Depends	ExperimentHub
Imports
System Requirements
URL	https://github.com/Tan-Jiahua/AWAggregatorData
Bug Reports	https://github.com/Tan-Jiahua/AWAggregatorData/issues

Suggests	BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	AWAggregator
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AWAggregatorData_1.2.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/AWAggregatorData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AWAggregatorData
Package Short Url	https://bioconductor.org/packages/AWAggregatorData/
Package Downloads Report	Download Stats