AnVILWorkflow
This is the released version of AnVILWorkflow; for the devel version, see AnVILWorkflow.
Run workflows implemented in Terra/AnVIL workspace
Bioconductor version: Release (3.21)
The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The main cloud-based genomics platform deported by the AnVIL project is Terra. The AnVILWorkflow package allows remote access to Terra implemented workflows, enabling end-user to utilize Terra/ AnVIL provided resources - such as data, workflows, and flexible/scalble computing resources - through the conventional R functions.
Author: Sehyun Oh [aut, cre]
, Marcel Ramos [ctb]
, Kai Gravel-Pucillo [aut]
Maintainer: Sehyun Oh <shbrief at gmail.com>
citation("AnVILWorkflow")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AnVILWorkflow")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AnVILWorkflow")| Quickstart - RNAseq analysis using salmon | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (2.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.4.0), AnVILGCP, AnVILBase, httr |
| Imports | AnVIL, dplyr, jsonlite, rlang, tibble, tidyr, utils, methods, plyr, stringr |
| System Requirements | |
| URL | https://github.com/shbrief/AnVILWorkflow |
| Bug Reports | https://github.com/shbrief/AnVILWorkflow/issues |
See More
| Suggests | knitr, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AnVILWorkflow_1.8.0.tar.gz |
| Windows Binary (x86_64) | AnVILWorkflow_1.8.0.zip |
| macOS Binary (x86_64) | AnVILWorkflow_1.8.0.tgz |
| macOS Binary (arm64) | AnVILWorkflow_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AnVILWorkflow |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AnVILWorkflow |
| Bioc Package Browser | https://code.bioconductor.org/browse/AnVILWorkflow/ |
| Package Short Url | https://bioconductor.org/packages/AnVILWorkflow/ |
| Package Downloads Report | Download Stats |