AnnotationForge
Tools for building SQLite-based annotation data packages
Bioconductor version: 3.23 · Package version: 1.54.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AnnotationForge")Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | Marc Carlson [aut], Hervé Pagès [aut], Madelyn Carlson [ctb] ('Creating probe packages' vignette translation from Sweave to Rmarkdown / HTML), Bioconductor Package Maintainer [cre] |
| License | Artistic-2.0 |
| URL | https://bioconductor.org/packages/AnnotationForge |
| Bug Reports | https://github.com/Bioconductor/AnnotationForge/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/AnnotationForge/ |
Citation
From within R, enter citation("AnnotationForge"):
Marc Carlson, Hervé Pagès. AnnotationForge: Tools for building SQLite-based annotation data packages. doi:10.18129/B9.bioc.AnnotationForge, R package version 1.54.0, https://bioconductor.org/packages/AnnotationForge.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | AnnotationForge_1.54.0.tar.gz |
| Windows binary (x86_64) | AnnotationForge_1.53.0.zip |
| macOS binary (arm64) | AnnotationForge_1.54.0.tgz |
| macOS binary (x86_64) | AnnotationForge_1.54.0.tgz |
Dependencies
Depends: R (>= 3.5.0), methods, utils, BiocGenerics (>= 0.15.10), Biobase (>= 1.17.0), AnnotationDbi (>= 1.33.14)
Imports: DBI, RSQLite, XML, S4Vectors, RCurl
Suggests: biomaRt, httr, GenomeInfoDb (>= 1.17.1), Biostrings, affy, hgu95av2.db, human.db0, org.Hs.eg.db, Homo.sapiens, GO.db, rmarkdown, BiocStyle, knitr, BiocManager, BiocFileCache, RUnit
Reverse dependencies
Imports Me (4): AnnotationHubData, GGHumanMethCancerPanelv1.db, GOstats, ViSEAGO
Suggests Me (2): AnnotationDbi, AnnotationHub