BiocPkgTools
This is the released version of BiocPkgTools; for the devel version, see BiocPkgTools.
Collection of simple tools for learning about Bioconductor Packages
Bioconductor version: Release (3.23)
Bioconductor has a rich ecosystem of metadata around packages, usage, and build status. This package is a simple collection of functions to access that metadata from R. The goal is to expose metadata for data mining and value-added functionality such as package searching, text mining, and analytics on packages.
Author: Shian Su [aut, ctb], Lori Shepherd [ctb], Marcel Ramos [aut, ctb]
, Felix G.M. Ernst [ctb], Jennifer Wokaty [ctb], Charlotte Soneson [ctb], Martin Morgan [ctb], Vince Carey [ctb], Sean Davis [aut, cre]
Maintainer: Sean Davis <seandavi at gmail.com>
citation("BiocPkgTools")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocPkgTools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocPkgTools")| Overview of BiocPkgTools | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.30.1 |
| In Bioconductor since | BioC 3.8 (R-3.5) (8 years) |
| License | MIT + file LICENSE |
| Depends | htmlwidgets, R (>= 4.1.0) |
| Imports | BiocFileCache, BiocManager, biocViews, tibble, methods, rlang, stringr, stats, rvest, dplyr, xml2, readr, httr, httr2, htmltools, DT, tools, utils, igraph (>= 2.0.0), jsonlite, gh, RBGL, graph, curl, glue, lubridate, purrr, tidyr, yaml |
| System Requirements | mailsend-go |
| URL | https://github.com/seandavi/BiocPkgTools |
| Bug Reports | https://github.com/seandavi/BiocPkgTools/issues/new |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat, tm, networkD3, visNetwork, clipr, blastula, kableExtra, DiagrammeR, SummarizedExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | BiocPkgDash |
| Suggests Me | biocViews, OSTA, rworkflows |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BiocPkgTools_1.30.1.tar.gz |
| Windows Binary (x86_64) | BiocPkgTools_1.30.1.zip |
| macOS Binary (big-sur-x86_64) | BiocPkgTools_1.30.1.tgz |
| macOS Binary (sonoma-arm64) | BiocPkgTools_1.30.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BiocPkgTools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocPkgTools |
| Bioc Package Browser | https://code.bioconductor.org/browse/BiocPkgTools/ |
| Package Short Url | https://bioconductor.org/packages/BiocPkgTools/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.23 | Source Archive |