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CAMERA

This is the released version of CAMERA; for the devel version, see CAMERA.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Collection of annotation related methods for mass spectrometry data


Bioconductor version: Release (3.23)

Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments

Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R, enter citation("CAMERA")):

Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann. CAMERA: Collection of annotation related methods for mass spectrometry data. doi:10.18129/B9.bioc.CAMERA, R package version 1.68.0, https://bioconductor.org/packages/CAMERA.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CAMERA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAMERA")
Molecule Identification with CAMERA PDF R Script
Atom count expectations with compoundQuantiles PDF
Isotope pattern validation with CAMERA PDF
Reference ManualPDF
NEWSText

Details

biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version1.68.0
In Bioconductor sinceBioC 2.4 (R-2.9) (17.5 years)
License GPL (>= 2)
Depends R (>= 3.5.0), methods, Biobase, xcms (>= 1.13.5)
Imports methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph
System Requirements
URLhttp://msbi.ipb-halle.de/msbi/CAMERA/
Bug Reportshttps://github.com/sneumann/CAMERA/issues/new
See More
Suggests faahKO, RUnit, BiocGenerics, multtest
Linking To
Enhances Rmpi, snow
Depends On Me flagme, IPO, LOBSTAHS, MAIT, metaMS, PtH2O2lipids
Imports Me
Suggests Me cliqueMS, msPurity, mtbls2, RMassBank
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CAMERA_1.68.0.tar.gz
Windows Binary (x86_64) CAMERA_1.68.0.zip
macOS Binary (big-sur-x86_64) CAMERA_1.67.0.tgz
macOS Binary (sonoma-arm64) CAMERA_1.68.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/CAMERA
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/CAMERA
Package Short Url https://bioconductor.org/packages/CAMERA/
Package Downloads ReportDownload Stats