• Home
• Bioconductor 3.23
• Software Packages
• CGHnormaliter

CGHnormaliter

This is the released version of CGHnormaliter; for the devel version, see CGHnormaliter.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Normalization of array CGH data with imbalanced aberrations.

DOI: 10.18129/B9.bioc.CGHnormaliter

Bioconductor version: Release (3.23)

Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).

Author: Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling

Maintainer: Bart P.P. van Houte <bvhoute at few.vu.nl>

Citation (from within R, enter citation("CGHnormaliter")):

Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling. CGHnormaliter: Normalization of array CGH data with imbalanced aberrations. doi:10.18129/B9.bioc.CGHnormaliter, R package version 1.66.0, https://bioconductor.org/packages/CGHnormaliter.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CGHnormaliter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CGHnormaliter")

Details

Package Archives

Follow Installation instructions to use this package in your R session.