CHRONOS

This is the released version of CHRONOS; for the devel version, see CHRONOS.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Bioconductor version: Release (3.23)

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

Author: Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

Maintainer: Panos Balomenos <balomenos at upatras.gr>

Citation (from within R, enter citation("CHRONOS")):

Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos. CHRONOS: CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis. doi:10.18129/B9.bioc.CHRONOS, R package version 1.40.0, https://bioconductor.org/packages/CHRONOS.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CHRONOS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CHRONOS")

CHRONOS	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GraphAndNetwork, KEGG, Pathways, Software, SystemsBiology
Version	1.40.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	GPL-2
Depends	R (>= 3.5)
Imports	XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, igraph, circlize, graph, stats, utils, grDevices, graphics, methods, biomaRt, rJava
System Requirements	Java version >= 1.7, Pandoc
URL

Suggests	RUnit, BiocGenerics, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CHRONOS_1.40.0.tar.gz
Windows Binary (x86_64)	CHRONOS_1.40.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	CHRONOS_1.40.0.tgz
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/CHRONOS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CHRONOS
Package Short Url	https://bioconductor.org/packages/CHRONOS/
Package Downloads Report	Download Stats