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ChIPseqR

This is the released version of ChIPseqR; for the devel version, see ChIPseqR.

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Identifying Protein Binding Sites in High-Throughput Sequencing Data

DOI: 10.18129/B9.bioc.ChIPseqR

Bioconductor version: Release (3.23)

ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.

Author: Peter Humburg

Maintainer: Peter Humburg <peter.humburg at gmail.com>

Citation (from within R, enter citation("ChIPseqR")):

Peter Humburg. ChIPseqR: Identifying Protein Binding Sites in High-Throughput Sequencing Data. doi:10.18129/B9.bioc.ChIPseqR, R package version 1.66.0, https://bioconductor.org/packages/ChIPseqR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChIPseqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPseqR")

Details

Package Archives

Follow Installation instructions to use this package in your R session.