DNAZooData
DNA Zoo data package
Bioconductor version: 3.23 · Package version: 1.12.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
DNAZooData is a data package giving programmatic access to genome assemblies and Hi-C contact matrices uniformly processed by the [DNA Zoo Consortium](https://www.dnazoo.org/). The matrices are available in the multi-resolution `.hic` format. A URL to corrected genome assemblies in `.fastq` format is also provided to the end-user.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DNAZooData")Details
| Maintainer | Jacques Serizay <jacquesserizay@gmail.com> |
| Author | Jacques Serizay [aut, cre] |
| License | MIT + file LICENSE |
| URL | https://github.com/js2264/DNAZooData |
| Bug Reports | https://github.com/js2264/DNAZooData/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, SequencingData |
| Package Short Url | https://bioconductor.org/packages/DNAZooData/ |
Citation
From within R, enter citation("DNAZooData"):
Jacques Serizay. DNAZooData: DNA Zoo data package. doi:10.18129/B9.bioc.DNAZooData, R package version 1.12.0, https://bioconductor.org/packages/DNAZooData.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | DNAZooData_1.12.0.tar.gz |
Dependencies
Depends: R (>= 4.2), HiCExperiment
Imports: BiocFileCache, S4Vectors, rjson, utils, tools
Suggests: dplyr, testthat, methods, BiocStyle, knitr, rmarkdown