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GCPtools

This is the released version of GCPtools; for the devel version, see GCPtools.

All versions 3.24 (devel), 3.23 (release), 3.22

Tools for working with gcloud and gsutil


Bioconductor version: Release (3.23)

Lower-level functionality to interface with Google Cloud Platform tools. 'gcloud' and 'gsutil' are both supported. The functionality provided centers around utilities for the AnVIL platform.

Author: Marcel Ramos [aut, cre] ORCID iD ORCID: 0000-0002-3242-0582 , Nitesh Turaga [aut], Martin Morgan [aut] ORCID iD ORCID: 0000-0002-5874-8148

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("GCPtools")):

Marcel Ramos, Nitesh Turaga, Martin Morgan. GCPtools: Tools for working with gcloud and gsutil. doi:10.18129/B9.bioc.GCPtools, R package version 1.2.1, https://bioconductor.org/packages/GCPtools.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GCPtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GCPtools")
GCPtools Introduction HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews DataImport, Infrastructure, Software, ThirdPartyClient
Version1.2.1
In Bioconductor sinceBioC 3.22 (R-4.5) (1 year)
License Artistic-2.0
Depends R (>= 4.5.0)
Imports AnVILBase, BiocBaseUtils, dplyr, httr, rlang, tibble, tidyr, utils
System Requirementsgsutil, gcloud
URLhttps://github.com/Bioconductor/GCPtools
Bug Reportshttps://github.com/Bioconductor/GCPtools/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me AnVIL, AnVILGCP, AnVILWorkflow
Suggests Me AnVILBase, AnVILPublish, terraTCGAdata
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GCPtools_1.2.1.tar.gz
Windows Binary (x86_64) GCPtools_1.2.1.zip
macOS Binary (big-sur-x86_64) GCPtools_1.2.1.tgz
macOS Binary (sonoma-arm64) GCPtools_1.2.1.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/GCPtools
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/GCPtools
Package Short Url https://bioconductor.org/packages/GCPtools/
Package Downloads ReportDownload Stats
Old Source Packages for BioC 3.23Source Archive