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GreyListChIP

This is the released version of GreyListChIP; for the devel version, see GreyListChIP.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

Grey Lists -- Mask Artefact Regions Based on ChIP Inputs

DOI: 10.18129/B9.bioc.GreyListChIP

Bioconductor version: Release (3.23)

Identify regions of ChIP experiments with high signal in the input, that lead to spurious peaks during peak calling. Remove reads aligning to these regions prior to peak calling, for cleaner ChIP analysis.

Author: Matt Eldridge [cre], Gord Brown [aut]

Maintainer: Matt Eldridge <matthew.eldridge at cruk.cam.ac.uk>

Citation (from within R, enter citation("GreyListChIP")):

Gord Brown. GreyListChIP: Grey Lists -- Mask Artefact Regions Based on ChIP Inputs. doi:10.18129/B9.bioc.GreyListChIP, R package version 1.44.0, https://bioconductor.org/packages/GreyListChIP.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GreyListChIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GreyListChIP")

Details

Package Archives

Follow Installation instructions to use this package in your R session.