MetaDICT
This is the released version of MetaDICT; for the devel version, see MetaDICT.
Microbiome data integration method via shared dictionary learning
Bioconductor version: Release (3.23)
MetaDICT is a method for the integration of microbiome data. This method is designed to remove batch effects and preserve biological variation while integrating heterogeneous datasets. MetaDICT can better avoid overcorrection when unobserved confounding variables are present.
Author: Bo Yuan [aut, cre] 
, Shulei Wang [aut]
Maintainer: Bo Yuan <boyuan5 at illinois.edu>
citation("MetaDICT")):Bo Yuan, Shulei Wang. MetaDICT: Microbiome data integration method via shared dictionary learning. doi:10.18129/B9.bioc.MetaDICT, R package version 1.2.0, https://bioconductor.org/packages/MetaDICT.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MetaDICT")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaDICT")| MetaDICT Tutorial | HTML | R Script |
| Reference Manual |
Details
| biocViews | BatchEffect, Clustering, Microbiome, Sequencing, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.22 (R-4.5) (1 year) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2.0) |
| Imports | stats, RANN, igraph, vegan, edgeR, ecodist, ggplot2, viridis, ggpubr, ape, cluster, matrixStats |
| System Requirements | |
| URL | https://github.com/BoYuan07/MetaDICT |
| Bug Reports | https://github.com/BoYuan07/MetaDICT/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, DT, ggraph, tidyverse, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MetaDICT_1.2.0.tar.gz |
| Windows Binary (x86_64) | MetaDICT_1.2.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | MetaDICT_1.2.0.tgz |
| macOS Binary (sonoma-arm64) | MetaDICT_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaDICT |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaDICT |
| Package Short Url | https://bioconductor.org/packages/MetaDICT/ |
| Package Downloads Report | Download Stats |