RFLOMICS
This is the released version of RFLOMICS; for the devel version, see RFLOMICS.
All Bioconductor versions of RFLOMICS
3.24 (devel), 3.23 (release), 3.22, 3.21
Interactive web application for Omics-data analysis
Bioconductor version: 3.23 · Package version: 1.4.2
R-package with shiny interface, provides a framework for the analysis of transcriptomics, proteomics and/or metabolomics data. The interface offers a guided experience for the user, from the definition of the experimental design to the integration of several omics table together. A report can be generated with all settings and analysis results.
Author: Nadia Bessoltane [aut, cre] 
, Delphine Charif [aut] , Audrey Hulot [aut] , Christine Paysant-Leroux [aut] , Gwendal Cueff [aut]
Maintainer: Nadia Bessoltane <nadia.bessoltane at inrae.fr>
Citation
From within R, enter citation("RFLOMICS"):
Nadia Bessoltane, Delphine Charif, Audrey Hulot, Christine Paysant-Leroux, Gwendal Cueff. RFLOMICS: Interactive web application for Omics-data analysis. doi:10.18129/B9.bioc.RFLOMICS, R package version 1.4.2, https://bioconductor.org/packages/RFLOMICS.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RFLOMICS")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.4.2 |
| License | Artistic-2.0 |
| URL | https://github.com/RFLOMICS/RFLOMICS |
| Bug Reports | https://github.com/RFLOMICS/RFLOMICS/issues |
| System Requirements | Python (>=3), numpy, pandas, h5py, scipy, argparse, sklearn, mofapy2 (>=0.7.1) |
| Last updated | 2026-07-05 |
| In Bioconductor since | BioC 3.21 (R-4.5) (1 year) |
| Downloads rank | 1689 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, Metabolomics, Proteomics, ShinyApps, Software, Transcriptomics |
| Package Short Url | https://bioconductor.org/packages/RFLOMICS/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RFLOMICS")| RFLOMICS | HTML | R Script |
| RFLOMICS Command line | HTML | R Script |
| RFLOMICS input format | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | RFLOMICS_1.4.2.tar.gz |
| Windows binary (x86_64) | RFLOMICS_1.4.2.zip |
| macOS binary (arm64) | RFLOMICS_1.4.2.tgz |
| macOS binary (x86_64) | RFLOMICS_1.4.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RFLOMICS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RFLOMICS |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.23 | Source Archive |
Dependencies
Depends: R (>= 4.4.0), SummarizedExperiment, MultiAssayExperiment, shinyBS, dplyr, ggplot2, htmltools, knitr, coseq
Imports: vroom, org.At.tair.db, AnnotationDbi, clusterProfiler, ComplexHeatmap, data.table, DT, edgeR, FactoMineR, ggpubr, ggnetwork, ggrepel, grDevices, grid, httr, limma, magrittr, methods, mixOmics, MOFA2, plotly, purrr, RColorBrewer, reshape2, reticulate, rmarkdown, S4Vectors, shiny, shinydashboard, shinyWidgets, stats, stringr, tidyr, tibble, tidyselect, UpSetR
Suggests: testthat, shinytest2, BiocStyle, org.Hs.eg.db