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RcwlPipelines

This is the released version of RcwlPipelines; for the devel version, see RcwlPipelines.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

Bioinformatics pipelines based on Rcwl


Bioconductor version: Release (3.23)

A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.

Author: Qiang Hu [aut, cre], Qian Liu [aut], Shuang Gao [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("RcwlPipelines")):

Qiang Hu, Qian Liu, Shuang Gao. RcwlPipelines: Bioinformatics pipelines based on Rcwl. doi:10.18129/B9.bioc.RcwlPipelines, R package version 1.28.0, https://bioconductor.org/packages/RcwlPipelines.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RcwlPipelines")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RcwlPipelines")
RcwlPipelines HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews Alignment, DNASeq, DataImport, ImmunoOncology, Preprocessing, QualityControl, RNASeq, Software, WorkflowStep
Version1.28.0
In Bioconductor sinceBioC 3.9 (R-3.6) (7.5 years)
License GPL-2
Depends R (>= 3.6), Rcwl, BiocFileCache
Imports rappdirs, methods, utils, git2r, httr, S4Vectors
System Requirementsnodejs
URL
See More
Suggests testthat, knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me ReUseData
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RcwlPipelines_1.28.0.tar.gz
Windows Binary (x86_64) RcwlPipelines_1.28.0.zip
macOS Binary (big-sur-x86_64) RcwlPipelines_1.28.0.tgz
macOS Binary (sonoma-arm64) RcwlPipelines_1.28.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/RcwlPipelines
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/RcwlPipelines
Package Short Url https://bioconductor.org/packages/RcwlPipelines/
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