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ScaledMatrix

This is the released version of ScaledMatrix; for the devel version, see ScaledMatrix.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

Creating a DelayedMatrix of Scaled and Centered Values


Bioconductor version: Release (3.23)

Provides delayed computation of a matrix of scaled and centered values. The result is equivalent to using the scale() function but avoids explicit realization of a dense matrix during block processing. This permits greater efficiency in common operations, most notably matrix multiplication.

Author: Aaron Lun [aut, cre, cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("ScaledMatrix")):

Aaron Lun. ScaledMatrix: Creating a DelayedMatrix of Scaled and Centered Values. doi:10.18129/B9.bioc.ScaledMatrix, R package version 1.20.0, https://bioconductor.org/packages/ScaledMatrix.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ScaledMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ScaledMatrix")
Using the ScaledMatrix HTML R Script
Reference ManualPDF

Details

biocViews DataRepresentation, Software
Version1.20.0
In Bioconductor sinceBioC 3.13 (R-4.1) (5.5 years)
License GPL-3
Depends
Imports methods, Matrix, S4Vectors, DelayedArray
System Requirements
URLhttps://github.com/LTLA/ScaledMatrix
Bug Reportshttps://github.com/LTLA/ScaledMatrix/issues
See More
Suggests testthat, BiocStyle, knitr, rmarkdown, BiocSingular, DelayedMatrixStats
Linking To
Enhances
Depends On Me
Imports Me batchelor, BiocSingular, mumosa, scPCA
Suggests Me scran
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ScaledMatrix_1.20.0.tar.gz
Windows Binary (x86_64) ScaledMatrix_1.20.0.zip
macOS Binary (big-sur-x86_64) ScaledMatrix_1.20.0.tgz
macOS Binary (sonoma-arm64) ScaledMatrix_1.20.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/ScaledMatrix
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/ScaledMatrix
Package Short Url https://bioconductor.org/packages/ScaledMatrix/
Package Downloads ReportDownload Stats