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cbaf

This is the released version of cbaf; for the devel version, see cbaf.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

Automated functions for comparing various omic data from cbioportal.org

DOI: 10.18129/B9.bioc.cbaf

Bioconductor version: Release (3.23)

This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.

Author: Arman Shahrisa [aut, cre, cph], Maryam Tahmasebi Birgani [aut]

Maintainer: Arman Shahrisa <shahrisa.arman at hotmail.com>

Citation (from within R, enter citation("cbaf")):

Arman Shahrisa, Maryam Tahmasebi Birgani. cbaf: Automated functions for comparing various omic data from cbioportal.org. doi:10.18129/B9.bioc.cbaf, R package version 1.34.0, https://bioconductor.org/packages/cbaf.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cbaf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cbaf")

Details

Package Archives

Follow Installation instructions to use this package in your R session.