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chopsticks

This is the released version of chopsticks; for the devel version, see chopsticks.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8

The 'snp.matrix' and 'X.snp.matrix' Classes


Bioconductor version: Release (3.23)

Implements classes and methods for large-scale SNP association studies

Author: Hin-Tak Leung <htl10 at users.sourceforge.net>

Maintainer: Hin-Tak Leung <htl10 at users.sourceforge.net>

Citation (from within R, enter citation("chopsticks")):

Hin-Tak Leung. chopsticks: The 'snp.matrix' and 'X.snp.matrix' Classes. doi:10.18129/B9.bioc.chopsticks, R package version 1.78.0, https://bioconductor.org/packages/chopsticks.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chopsticks")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chopsticks")
snpMatrix PDF R Script
Reference ManualPDF

Details

biocViews GeneticVariability, Microarray, SNP, SNPsAndGeneticVariability, Software
Version1.78.0
In Bioconductor sinceBioC 2.8 (R-2.13) (15.5 years)
License GPL-3
Depends
Imports graphics, stats, utils, methods, survival
System Requirements
URLhttp://outmodedbonsai.sourceforge.net/
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chopsticks_1.78.0.tar.gz
Windows Binary (x86_64) chopsticks_1.78.0.zip
macOS Binary (big-sur-x86_64) chopsticks_1.78.0.tgz
macOS Binary (sonoma-arm64) chopsticks_1.78.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/chopsticks
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/chopsticks
Package Short Url https://bioconductor.org/packages/chopsticks/
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