IDs                     KEGG ID mapping of metabolites in data set
                        longitudinalMetabolomics
ORA_hypergeometric      OverRepresentationAnalysis with a
                        hypergeometric model
cluster_dynamics        cluster dynamics profiles of metabolites
compare_dynamics        Comparison of metabolite dynamics clusters
                        under different experimental conditions
compare_metabolites     Comparison of metabolite sets between dynamics
                        clusters of different experimental conditions
diagnostics_dynamics    Extracts diagnostic criteria from numeric fit
                        of Bayesian model of dynamics
estimates_dynamics      Extracts parameter estimates from numeric fit
                        of Bayesian model of dynamics
fit_dynamics_model      Fits dynamics model
get_ORA_annotations     Retrieve background and annotation information
                        for over-representation analysis (ORA)
heatmap_dynamics        plot bubble heatmap from the numerical fit of
                        compare_dynamics()
heatmap_metabolites     plot heatmap from comparison of metabolite
                        composition compare_metabolites()
longitudinalMetabolomics
                        A simulated data set of longitudinal
                        concentration tables of metabolites.
longitudinalMetabolomics_df
                        A simulated data set of longitudinal
                        concentration tables of metabolites.  In
                        contrast to "longitudinalMetabolomics" this
                        dataset is in data frame format.  It was
                        simulated with a different seed compared to
                        longitudinalMetabolomics so the results can
                        deviate.
metabolite_modules      KEGG Query Results of experimental metabolites
modules_compounds       Background KEGG Query Results Of Functional
                        Modules
plot_ORA                Plot results of over-representation analysis
                        with ORA_hypergeometric()
plot_PPC                Plots posterior predictive check of numerical
                        fit of Bayesian dynamics model
plot_cluster            visualize clustering solution of
                        cluster_dynamics()
plot_diagnostics        Plot diagnostic criteria of numerical fit of
                        Bayesian model of dynamics
plot_estimates          Visualization of parameter estimates from
                        numeric fit of Bayesian model of dynamics
