Functions for normalisation of RT-qPCR data

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Documentation for package ‘NormqPCR’ version 1.55.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

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NormqPCR-package	Functions for normalisation of RT-qPCR data.
Bladder	Bladder dataset of Andersen et al (2004)
BladderRepro	Dataset of Andersen et al (2004)
BladderRepro.qPCRBatch	Dataset of Andersen et al (2004)
Colon	Colon dataset of Andersen et al (2004)
combineTechReps	Combines Technical Replicates
combineTechReps-method	Combines Technical Replicates
combineTechRepsWithSD	Combines Technical Replicates
combineTechRepsWithSD-method	Combines Technical Replicates
ComputeNRQs	Compute Normalized Relative Quantities
ComputeNRQs-method	Compute Normalized Relative Quantities
ComputeNRQs-methods	Compute Normalized Relative Quantities
CqValues	Compute Cq value and amplification efficiency
CqValues-method	Compute Cq value and amplification efficiency
CqValues-methods	Compute Cq value and amplification efficiency
deltaCq	Perform normalization with a given housekeeping gene
deltaCt	Perform normalization with a given housekeeping gene
deltaCt-method	Perform normalization with a given housekeeping gene
deltaCt-methods	Perform normalization with a given housekeeping gene
deltaDeltaCq	Perform normalization and differential expression with given housekeeping gene
deltaDeltaCq-method	Perform normalization and differential expression with given housekeeping gene
deltaDeltaCq-methods	Perform normalization and differential expression with given housekeeping gene
deltaDeltaCt	Perform normalization and differential expression with given housekeeping gene
deltaDeltaCt-method	Perform normalization and differential expression with given housekeeping gene
deltaDeltaCt-methods	Perform normalization and differential expression with given housekeeping gene
geNorm	Data set of Vandesompele et al (2002)
geNorm.qPCRBatch	Data set of Vandesompele et al (2002)
geomMean	Geometric Mean
makeAllNAs	Make all Cq values NA
makeAllNAs-method	Make all Cq values NA
makeAllNewVal	Make all Cq values NA
makeAllNewVal-method	Make all Cq values NA
NormqPCR	Functions for normalisation of RT-qPCR data.
replaceAboveCutOff	Replace Cq values with new value
replaceAboveCutOff-method	Replace Cq values with new value
replaceNAs	Replace NAs with a given value
replaceNAs-method	Replace NAs with a given value
selectHKs	Selection of reference/housekeeping genes
selectHKs-method	Selection of reference/housekeeping genes
selectHKs-methods	Selection of reference/housekeeping genes
stabMeasureM	Gene expression stability value M
stabMeasureRho	Gene expression stability value rho
stabMeasureRho-method	Gene expression stability value rho
stabMeasureRho-methods	Gene expression stability value rho