Large-scale single-cell RNA-seq data analysis using GDS files and Seurat

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Documentation for package ‘SCArray.sat’ version 1.9.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

SCArray.sat-package	Large-scale single-cell RNA-seq data analysis using GDS files and Seurat
CreateAssayObject2	Create an Assay object
GetAssayData	SCArrayAssay S3 methods
GetAssayData.SCArrayAssay	SCArrayAssay S3 methods
NormalizeData	Normalize Count Data
NormalizeData.SC_GDSMatrix	Normalize Count Data
RunPCA	Run PCA
RunPCA.SCArrayAssay	Run PCA
RunPCA.SC_GDSMatrix	Run PCA
ScaleData	Scale and Center the Data
ScaleData.SC_GDSMatrix	Scale and Center the Data
SCArray.sat	Large-scale single-cell RNA-seq data analysis using GDS files and Seurat
SCArrayAssay	GDS-specific Assay Class
SCArrayAssay-class	GDS-specific Assay Class
SCArrayAssay-methods	SCArrayAssay S3 methods
scGetFiles	File names for on-disk backend
scGetFiles-method	File names for on-disk backend
scMemory	Load Data to Memory
scMemory-method	Load Data to Memory
scNewAssayGDS	Create Assay Object
scNewSeuratGDS	Create Seurat Object
SetAssayData	SCArrayAssay S3 methods
SetAssayData.SCArrayAssay	SCArrayAssay S3 methods
Seurat_g	GDS-based Seurat Class
Seurat_g-class	GDS-based Seurat Class
subset	SCArrayAssay S3 methods
subset.SCArrayAssay	SCArrayAssay S3 methods