Exposes and Makes Available Data from the cBioPortal Web Resources

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Documentation for package ‘cBioPortalData’ version 2.21.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.cBioPortal	A class for representing the cBioPortal API protocol
allSamples	The R interface to the cBioPortal API Data Service
cBioCache	Manage cache / download directories for study data
cBioCache-defunct	Defunct cache helper functions
cBioDataPack	Obtain pre-packaged data from cBioPortal and represent as a MultiAssayExperiment object
cBioPortal	The R interface to the cBioPortal API Data Service
cBioPortal-class	A class for representing the cBioPortal API protocol
cBioPortalData	Download data from the cBioPortal API
clinicalData	The R interface to the cBioPortal API Data Service
copyNumberData	The R interface to the cBioPortal API Data Service
downloadStudy	Manually download, untar, and load study tarballs
fetchData	The R interface to the cBioPortal API Data Service
genePanelMolecular	The R interface to the cBioPortal API Data Service
genePanels	The R interface to the cBioPortal API Data Service
geneTable	The R interface to the cBioPortal API Data Service
getDataByGenes	The R interface to the cBioPortal API Data Service
getGenePanel	The R interface to the cBioPortal API Data Service
getGenePanelMolecular	The R interface to the cBioPortal API Data Service
getSampleInfo	The R interface to the cBioPortal API Data Service
getStudies	The R interface to the cBioPortal API Data Service
loadStudy	Manually download, untar, and load study tarballs
molecularData	The R interface to the cBioPortal API Data Service
molecularProfiles	The R interface to the cBioPortal API Data Service
mutationData	The R interface to the cBioPortal API Data Service
operations-method	A class for representing the cBioPortal API protocol
queryGeneTable	The R interface to the cBioPortal API Data Service
removeDataCache	Defunct cache helper functions
removePackCache	Manage cache / download directories for study data
sampleLists	The R interface to the cBioPortal API Data Service
samplesInSampleLists	The R interface to the cBioPortal API Data Service
searchOps	The R interface to the cBioPortal API Data Service
setCache	Manage cache / download directories for study data
untarStudy	Manually download, untar, and load study tarballs