Phylogenetic, Distance and Other Calculations on VCF and Fasta Files

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Documentation for package ‘fastreeR’ version 1.99.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

dist2clusters	Perform Hierarchical Clustering and tree pruning on a distance matrix
dist2tree	Generate phylogenetic tree from samples of a distance matrix
fasta2dist	Calculate distances between sequences of a FASTA file
tree2clusters	Perform Hierarchical Clustering and tree pruning on a phylogenetic tree
vcf2clusters	Perform Hierarchical Clustering and tree pruning on samples of VCF file
vcf2dist	Calculate distances between samples of a VCF file
vcf2istats	Calculate various per sample statistics from a VCF file
vcf2tree	Generate phylogenetic tree from samples of a VCF file