Detection, Characterization and Visualization of Kataegis in Sequencing Data

---

Documentation for package ‘katdetectr’ version 1.11.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

constructKatdetect	constructKatdetect
detectKataegis	detectKataegis
generateSyntheticData	Generate genomic variants with pre-defined kataegis foci.
getGenomicVariants	Retrieve genomic variants from KatDetect object.
getGenomicVariants-method	Retrieve genomic variants from KatDetect object.
getInfo	Retrieve model parameters from a KatDetect object.
getInfo-method	Retrieve model parameters from a KatDetect object.
getKataegisFoci	Retrieve kateagis foci from a KatDetect object.
getKataegisFoci-method	Retrieve kateagis foci from a KatDetect object.
getSegments	Retrieve segments from KatDetect a object.
getSegments-method	Retrieve segments from KatDetect a object.
KatDetect-class	KatDetect-class: KatDetect objects
katdetectr	Katdetectr: A package for kataegis detection, characterization and visualization
rainfallPlot	Rainfall plot.