R implementation of the LEfSE method for microbiome biomarker
discovery
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Documentation for package ‘lefser’ version 1.19.1
Help Pages
| get_terminal_nodes | Identify which elements of a string are terminal nodes |
| lefser | R implementation of the LEfSe method |
| lefserClades | Run lefser at different clades |
| lefserPlot | Plots results from 'lefser' function |
| lefserPlotClad | LEfSer plot cladogram |
| lefserPlotFeat | Plot Feature |
| relativeAb | Utility function to calculate relative abundances |
| rowNames2RowData | RowNames to RowData |
| zeller14 | Example dataset for lefser |