Microbiome Time Series Analysis

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Documentation for package ‘miaTime’ version 0.99.9

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

miaTime-package	'miaTime' Package.
addBaselineDivergence	Beta diversity between the baseline and later time steps
addBaselineDivergence-method	Beta diversity between the baseline and later time steps
addBimodality	Calculate coefficient of bimodality.
addBimodality-method	Calculate coefficient of bimodality.
addShortTermChange	Short term changes in abundance
addShortTermChange-method	Short term changes in abundance
addStability	Estimate stability
addStability-method	Estimate stability
addStepwiseDivergence	Beta diversity between consecutive time steps
addStepwiseDivergence-method	Beta diversity between consecutive time steps
getBaselineDivergence	Beta diversity between the baseline and later time steps
getBaselineDivergence-method	Beta diversity between the baseline and later time steps
getBimodality	Calculate coefficient of bimodality.
getBimodality-method	Calculate coefficient of bimodality.
getShortTermChange	Short term changes in abundance
getShortTermChange-method	Short term changes in abundance
getStability	Estimate stability
getStability-method	Estimate stability
getStepwiseDivergence	Beta diversity between consecutive time steps
getStepwiseDivergence-method	Beta diversity between consecutive time steps
hitchip1006	HITChip Atlas with 1006 Western Adults
miaTime	'miaTime' Package.
minimalgut	Human Gut Minimal Microbiome Profiling Data
SilvermanAGutData	SilvermanAGutData
temporalMicrobiome20	Gut Microbiome Profiling 20 Belgian Women