Network smoothing for scRNAseq

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Documentation for package ‘netSmooth’ version 1.29.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

human.ppi	Human Protein-Protein interaction graph
mouse.ppi	Mouse Protein-Protein interaction graph
netSmooth	Perform network smoothing of gene expression or other omics data
netSmooth-method	Perform network smoothing of gene expression or other omics data
pickDimReduction	Pick the dimensionality reduction method for a dataset that gives the 2D embedding with the highest entropy
pickDimReduction-method	Pick the dimensionality reduction method for a dataset that gives the 2D embedding with the highest entropy
robustClusters	Perform robust clustering on dataset, and calculate the proportion of samples in robust clusters
robustClusters-method	Perform robust clustering on dataset, and calculate the proportion of samples in robust clusters
smallPPI	A small human Protein-Protein interaction graph for use in examples.
smallscRNAseq	A small single cell RNA-seq dataset for use in examples.