Open Cancer TherApeutic Discovery (OCTAD)

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Documentation for package ‘octad’ version 1.11.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

computeCellLine	Compute Correlation between cell lines and vector of case ids.
computeRefTissue	Compute correlating reference control samples.
diffExp	Compute differential expression
loadOctadCounts	Load octad expression data
octad	Open Cancer TherApeutic Discovery (OCTAD) database package
octadDrugEnrichment	Compute Drug enrichment
res_example	Differential expression example for HCC vs adjacent liver tissue computed in diffExp() function
runsRGES	Compute sRGES
sRGES_example	Data of computed example sRGEs for HCC vs liver adjacent tissues on octad.small dataset
topLineEval	Evaluate cell lines