A CAusal Reasoning tool for Network Identification (from gene
expression data) using Integer VALue programming
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Documentation for package ‘CARNIVAL’ version 2.19.0
Help Pages
| checkOptionsValidity | Checks if provided option names are valid. |
| defaultCbcSolveCarnivalOptions | Sets default CARNIVAL options for cbc. |
| defaultCplexCarnivalOptions | Sets default CARNIVAL options for cplex. |
| defaultCplexSpecificOptions | Sets default options from cplex documentation. |
| defaultLpSolveCarnivalOptions | Sets default CARNIVAL options for lpSolve. |
| generateLpFileCarnival | 'generateLpFileCarnival' |
| getOptionsList | Returns the list of options needed/supported for each solver. |
| getSupportedSolvers | Returns the list of supported solvers. |
| isInputValidCarnival | Checks validity of all inputs of CARNIVAL |
| parseCplexLog | Parses the cplex log file and reads some basic information. |
| runCARNIVAL | 'runCARNIVAL' |
| runFromLpCarnival | 'runCarnivalFromLp' |
| runInverseCarnival | 'runInverseCarnival' |
| runVanillaCarnival | 'runVanillaCarnival' |
| setCarnivalOptions | Sets CARNIVAL options for the solver. |
| suggestedCbcSpecificOptions | Suggests cbc specific options. |
| suggestedCplexSpecificOptions | Suggests cplex specific options.s |
| writeCplexCommandFileFromJson | writeCplexCommandFileFromJson |