| getHiCoolArgs | Processing Hi-C paired-end fastq files in R |
| getHicStats | Processing Hi-C paired-end fastq files in R |
| getLoops | Finding loops in contact map |
| HiCool | Processing Hi-C paired-end fastq files in R |
| HiCReport | HiC processing report |
| importHiCoolFolder | Processing Hi-C paired-end fastq files in R |