Categorized views of R package repositories
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Documentation for package ‘biocViews’ version 1.77.2
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| biocViews-package | Categorized views of R package repositories |
| BiocView-class | Class "BiocView" |
| biocViews | Categorized views of R package repositories |
| biocViewsVocab | Bioconductor Task Views Vocabulary Data |
| build-dbs | Helper functions to generate HTML pages for reference manuals |
| build_db_from_source | Helper functions to generate HTML pages for reference manuals |
| build_meta_aliases_db | Helper functions to generate HTML pages for reference manuals |
| build_meta_rdxrefs_db | Helper functions to generate HTML pages for reference manuals |
| bvPackageTable-class | Class "BiocView" |
| bvParentViews-class | Class "BiocView" |
| bvSubViews-class | Class "BiocView" |
| bvTitle-class | Class "BiocView" |
| coerce-method | Class "BiocView" |
| dump_concept | produce character stream for use with Protege entities/class hierarchy ingestion based on biocViews subgraphs |
| extractCitations | Extract Rd man pages and build pdf reference manuals from local package repository |
| extractHTMLDocuments | Extract pdf vignettes from local package repository |
| extractManuals | Extract Rd man pages and build pdf reference manuals from local package repository |
| extractNEWS | Extract NEWS files from source package tarballs |
| extractTopLevelFiles | Extract files from the top level of source package tarballs |
| extractVignettes | Extract pdf vignettes from local package repository |
| genReposControlFiles | Generate CRAN-style repository control files |
| getBiocSubViews | Build a list of BiocView objects from a package repository |
| getBiocViews | Build a list of BiocView objects from a package repository |
| getCurrentbiocViews | Get a list of biocViews for each branch |
| getPackageDescriptions | Retrieve list of package titles and print package Description |
| getPackageNEWS | Retrieve and print package NEWS |
| getPackageTitles | Retrieve list of package titles and print package Description |
| getPacksAndViews | Parse VIEWS file for views and packages |
| getSubTerms | Retrieve a term and its children from a vocab DAG |
| guessPackageType | Guess Package Type (Software, ExperimentData, AnnotationData) using existing biocViews. |
| htmlDoc | Create a complete HTML document representation of an object |
| htmlDoc-method | Class "BiocView" |
| htmlDoc-method | Class "Htmlized" |
| htmlDoc-method | Class "PackageDetail" |
| htmlDoc-method | Class "RepositoryDetail" |
| htmlFilename | Return a filename for an object's HTML representation |
| htmlFilename-method | Class "BiocView" |
| htmlFilename-method | Class "PackageDetail" |
| htmlFilename-method | Class "RepositoryDetail" |
| htmlFilename-method | Return a filename for an object's HTML representation |
| Htmlized-class | Class "Htmlized" |
| htmlValue | HTML Representation of an Object |
| htmlValue-method | Class "BiocView" |
| htmlValue-method | Class "PackageDetail" |
| htmlValue-method | Class "RepositoryDetail" |
| makeVocInfo | Parse VIEWS file for views and packages |
| PackageDetail-class | Class "PackageDetail" |
| pdAuthorMaintainerInfo-class | Class "PackageDetail" |
| pdDescriptionInfo-class | Class "PackageDetail" |
| pdDetailsInfo-class | Class "PackageDetail" |
| pdDownloadInfo-class | Class "PackageDetail" |
| pdVignetteInfo-class | Class "PackageDetail" |
| pdVigsAndDownloads-class | Class "PackageDetail" |
| permulist | Parse VIEWS file for views and packages |
| printNEWS | Retrieve and print package NEWS |
| pump | Parse VIEWS file for views and packages |
| rdPackageTable-class | Class "RepositoryDetail" |
| recommendBiocViews | Recommend biocViews for an existing Package. |
| recommendPackages | Recommend Packages using existing biocViews. |
| RepositoryDetail-class | Class "RepositoryDetail" |
| show-method | Class "BiocView" |
| tellSubTop | Parse VIEWS file for views and packages |
| tellSuperTop | Parse VIEWS file for views and packages |
| validate_bioc_views | Validate a package's biocViews. |
| validation_tests | Validate a package's biocViews. |
| writeBiocViews | Write a list of BiocView objects to HTML |
| writeHtmlDoc | Write an XML DOM containing HTML to a file |
| writePackageDetailHtml | Write HTML files for packages in a CRAN-style repository |
| writeRepositoryHtml | Write package descriptions and a repository index as HTML |
| writeRFilesFromVignettes | Write R files from vignettes |
| writeTopLevelView | Write the view for the root of a vocabulary to disk |
| write_REPOSITORY | Write a REPOSITORY control file for a CRAN-style package repository |
| write_SYMBOLS | Write a SYMBOLS file |
| write_VIEWS | Write a VIEWS control file for a CRAN-style package repository |