Efficient Gene Set Enrichment Analysis for DNA Methylation Data

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Documentation for package ‘dmGsea’ version 0.99.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

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dmGsea	Efficient Gene Set Enrichment Analysis for DNA Methylation Data
geneID2geneName	Extract gene names for given entrezids
getGO	Extract GO pathway gene set
getIlluminaAnnotation	Extract CpG-Gene corresponding table from Illuminal annotation file.
getKEGG	Extract KEGG pathway gene set
getMSigDB	Extract MsigDB pathway gene set
getReactome	Extract Reactome pathway gene set
gsGene	Gene set enrichment analysis based on gene level combined test P values
gsPG	Gene set enrichment analysis based on combined probe group P values
gsProbe	Gene set enrichment analysis based on probe level P values
gsRank	Gene set enrichment analysis based on gene level P values