tricycle: Transferable Representation and Inference of cell cycle

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Documentation for package ‘tricycle’ version 1.17.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

circle_scale_legend	Get the cyclic legend
diagnose_totalumi	Diagnostic function for UMI based datasets
estimate_cycle_position	Assign cell cycle position
estimate_Schwabe_stage	Assign cell cycle stages using Schwabe method
fit_periodic_loess	Fit periodic loess line with circular predictor
neuroRef	Pre-learned reference projection matrix from the Neurosphere dataset
neurosphere_example	Example SingleCellExperiment dataset
plot_ccposition_den	Plot cell cycle position kernel density stratified by a factor
plot_emb_circle_scale	Plot embedding with cyclic cell cycle position
project_cycle_space	Project data into the cell cycle pattern space
RevelioGeneList	5 stage cell cycle gene marker list from Revelio
run_pca_cc_genes	Run PCA on Gene Ontology cell cycle genes