ann2term | Annotate the pathways from a scores matrix |
buildRefObject | Create a reference data object for input to the pathMED functions |
dissectDB | Split pathways into coexpressed subpathways |
genesetsData | Preloaded gene sets |
getScores | Calculate pathways scores for a dataset |
methodsML | Prepare the models parameter for the trainModel function |
mScores_createReference | Create a reference dataset based on M-scores |
mScores_filterPaths | Filter pathways from the reference M-scores dataset |
mScores_imputeFromReference | Estimate M-scores for a dataset without healthy controls |
pathMEDExampleData | Example of test gene expression data |
pathMEDExampleMetadata | Metadata of test gene expression data |
predictExternal | Predict conditions in external datasets |
refData | Example of reference gene expression datasets |
trainModel | Train ML models and perform internal validation |