| adaptRefs | Adapt references to imputed data |
| certainty | scoreInvHapRes instances |
| certainty-method | scoreInvHapRes instances |
| checkSNPs | Check genotype object |
| classification | scoreInvHapRes instances |
| classification-method | scoreInvHapRes instances |
| classifSNPs | Get similarity scores and probability |
| classifSNPsImpute | Get similarity scores and probability |
| computeScore | Compute all similarity scores for a sample |
| correctAlleleTable | Solve genotypes discrepancies |
| diffscores | scoreInvHapRes instances |
| diffscores-method | scoreInvHapRes instances |
| getAlleleTable | Compute the allele table |
| getGenotypesTable | Get genotypes table |
| getInvStatus | Get the inversion status of a sample |
| hetRefs | Heterozygote genotypes in the references |
| info | SNP reference description |
| inversionGR | Inversions' description |
| maxscores | scoreInvHapRes instances |
| maxscores-method | scoreInvHapRes instances |
| numSNPs | scoreInvHapRes instances |
| numSNPs-method | scoreInvHapRes instances |
| plotCallRate | scoreInvHapRes instances |
| plotCallRate-method | scoreInvHapRes instances |
| plotScores | scoreInvHapRes instances |
| plotScores-method | scoreInvHapRes instances |
| prepareMap | Modify feature data from VCF |
| propSNPs | scoreInvHapRes instances |
| propSNPs-method | scoreInvHapRes instances |
| Refs | Genotype frequency in references |
| scoreInvHap | scoreInvHap: package to get inversion status of predefined regions. |
| scoreInvHapRes | scoreInvHapRes instances |
| scoreInvHapRes-class | scoreInvHapRes instances |
| scoreInvHapRes-methods | scoreInvHapRes instances |
| scores | scoreInvHapRes instances |
| scores-method | scoreInvHapRes instances |
| SNPsR2 | R2 between the SNPs and the inversion status |